Hi Henrik,
Lowering memory helped - it's drinks on me when we meet.
It has been running for approximately 7 days now (ETA for unit type
'expression': 20140320 23:20:26). With the updated affxparser can I speed
it up by increasing the memory burden? The current memory allocation is
On Fri, Mar 7, 2014 at 8:05 AM, Damian Plichta damian.plic...@gmail.com wrote:
Hi Henrik,
Lowering memory helped - it's drinks on me when we meet.
It has been running for approximately 7 days now (ETA for unit type
'expression': 20140320 23:20:26). With the updated affxparser can I speed
it
Did lowering memory/ram solve your problem?
Also, an updated version of affxparser that no longer should overflow
by the integer multiplication is available (on Bioconductor).
Cheers,
Henrik
On Thu, Feb 27, 2014 at 12:36 PM, Henrik Bengtsson
henrik.bengts...@aroma-project.org wrote:
Congratulations Damian,
I think your the first one to hit a limit of the Aroma Framework
(remind me to by you a drink whenever you see me in person).
I narrowed it down to the affxparser(*) package and I'll investigate
further on how to fix this. It should not occur and I'm confident
that it
Hi Henrik,
Thank you, that was helpful.
I run to another problem though. I am trying to perform ExonRmaPlm(csQN,
merge=TRUE) but this produces a following error:
20140226 23:25:33| Identifying CDF cell indices...done
Error in vector(double, nbrOfCells * nbrOfArrays) :
vector size
