[Artemis-users] Import ORFS

[Mekhala Acharya]

Hi,

I have a list of ORFS imported from ARTEMIS. Is there a way to import the 
corresponding bases as well. Essentially I need to blast all the ORFS against 
the nr database of NCBI? Besides writing a script to do this, is there another 
route?

Thanks.
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fn:Mekhala Acharya
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org:George Mason University;School of Computational Sciences
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title:Teaching Assistant
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Re: [Artemis-users] Import ORFS

[Tim Carver]

Hi

You can write out the ORFs from Artemis. If you select all the ORF's by
going to the Select menu :

Select - By key

Then create a multiple fasta file by going to

Write - Bases of Selection - FASTA format

Regards
Tim


On 24/1/07 15:17, Mekhala Acharya [EMAIL PROTECTED] wrote:

 Hi,
 
 I have a list of ORFS imported from ARTEMIS. Is there a way to import the
 corresponding bases as well. Essentially I need to blast all the ORFS against
 the nr database of NCBI? Besides writing a script to do this, is there another
 route?
 
 Thanks.
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 Artemis-users mailing list
 Artemis-users@sanger.ac.uk
 http://lists.sanger.ac.uk/mailman/listinfo/artemis-users



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