Re: [Artemis-users] Artemis compatibility with BLAST+

2010-03-15 Thread Torsten Seemann
Guy, > Is there a version of (or suggested edits to) Artemis to make it compatible > with NCBI's BLAST+? I edited setup_dbs.sh to deal with makeblastdb replacing > formatdb, and that seems to have worked. But it strikes me that any internal > calls must use the old blastall command, and I'm not

[Artemis-users] Artemis compatibility with BLAST+

2010-03-15 Thread Guy Plunkett III
I apologize if this has been covered already, but when I try to access the archives I get: Forbidden You don't have permission to access /mailman/roster/artemis-users on this server. Is there a version of (or suggested edits to) Artemis to make it compatible with NCBI's BLAST+? I edited setup_

[Artemis-users] Artemis and ACT release

2010-03-15 Thread Tim Carver
Artemis (v12) and ACT (v9) have now been released and are available for download from: http://www.sanger.ac.uk/resources/software/artemis/ and http://www.sanger.ac.uk/resources/software/act/ Highlights are a new BAM file viewer, (see http://bamview.sourceforge.net which requires java 1.6+). In