Hi Yealing Thanks again. You are right, restricting the sequence range doesn¹t work in the linear display. If you want to remove the track you can do this from the Track Manager¹ using the Remove¹ buttons on the right.
Regards Tim On 11/1/10 2:42 AM, "Yealing" <yealingt+arte...@gmail.com> wrote: > Thanks, Tim, for the rapid reply. > > I've did exactly that, removing the tracks in artemis before launching > DNAPlotter. But is there a way to ask DNAPlotter not to draw the line for the > sequence without any tracks? What I previously meant was that I tried to use > the DNA wizard to define start and stop positions. But it only seems to work > in circular view and not linear view. E.g. When I have start set to 1000 and > stop set to 2000, the circular view displays bases 1000 to 2000, but when I > switch to linear view, it shows bases 1 to 2000. > > Sorry for asking a not-so-clear question before. Thanks again. > > Regards, > -- yealing -- > > > On Fri, Oct 29, 2010 at 4:35 PM, Tim Carver <t...@sanger.ac.uk> wrote: >> Hi Yealing >> >> Thanks for the feedback. >> >> One way to restrict the range on a track is to define it in Artemis first, >> i.e. delete the features outside a range by first selecting the features in >> the range (select base range and then select overlapping features) and toggle >> the selection (under the Select menu). In that way you can temporarily delete >> the features outside that range and save it to a new file. Or you can filter >> by a list of gene names (see the first example in the manual >> http://www.sanger.ac.uk/resources/software/dnaplotter/#t_3) in DNAPlotter. >> >> Unfortunately there is no easy way round the arrow head problem but I will >> try and get time to look at that. >> >> Regards >> Tim >> >> >> >> On 10/29/10 1:53 AM, "Yealing" <yealingt+arte...@gmail.com >> <mailto:yealingt%2barte...@gmail.com> > wrote: >> >>> Hello Tim >>> >>> I've had an experience with the DNA plotter where when I select to view only >>> a certain range of the DNA sequence, it only works on the "end" range but >>> not the "begin" range. For example, I have a 10kb DNA sequence and I'm >>> interested to plot features on 5kb-6kb. However, when I set the range at the >>> tracks, it plots from 1bp to 6kb. It works when I only set the "begin" >>> range, where if I only enter 5000 at begin and nothing for end, it will >>> display tracks from 5kb to 10kb. I wonder if anybody else is having that >>> problem or if it's just me. >>> >>> Also, is there a way to automatically draw the arrow heads according to the >>> directions that we a;ready specify from artemis? When we have a lot of >>> features, it's troublesome to have to go check the direction for each of >>> them and manually pick arrow head or arrow tail. >>> >>> Apologies if the answers can be found in the manual, but since Kajsa was >>> just inquiring about the DNA plotter, I thought I might as well. >>> >>> Thanks and best regards, >>> -- yealing -- >>> >>> >>> On Thu, Oct 28, 2010 at 11:20 PM, Tim Carver <t...@sanger.ac.uk> wrote: >>>> Hi Kajsa The best way to avoid that is to set up the tracks first. The >>>> track manager works by filtering the features to display and will refresh >>>> them when you click UPDATE. So you should ideally do your editing after you >>>> have set the tracks. Regards On 10/28/10 3:59 PM, "Kajsa Himmelstrand" >>>> <kajsa.himmelstr...@mykopat.slu.se> wrote: > Hello, > I have a question >>>> about the DNAplotter to MacOSX that I got with Artemis v12. > The program >>>> doesn't seem to work so well. For example, when I do things in the > Track >>>> Manager, things that I have previously edited disappears. Do you have > any >>>> better upgraded version without the bugs? It would otherwise be a very > >>>> good tool for me to use. In other case, is there any other similar program >>>> to > use while DNAplotter is being upgraded? > Best regards from Kajsa >>>> ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ > Kajsa Himmelstrand, PhD >>>> Student > Swedish University of Agricultural Sciences > Department of >>>> Forest Mycology and Pathology > >>>> _______________________________________________ > Artemis-users mailing >>>> list > Artemis-users@sanger.ac.uk > >>>> http://lists.sanger.ac.uk/mailman/listinfo/artemis-users >>>> _______________________________________________ Artemis-users mailing list >>>> Artemis-users@sanger.ac.uk >>>> http://lists.sanger.ac.uk/mailman/listinfo/artemis-users >>> >>> >> >> >> -- The Wellcome Trust Sanger Institute is operated by Genome Research >> Limited, a charity registered in England with number 1021457 and a company >> registered in England with number 2742969, whose registered office is 215 >> Euston Road, London, NW1 2BE. > >
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