Note:
The first "total sequence" lines are not necessary (the first 5 FT lines
in example =b=). This makes sense. Not sure, yet, if CLC treats the
sequences als separate contigs.
Cheers, Jack
> Dear Tim,
>
> Import in seqret was not faster than manual adaptation of the artemis
> output file. Thi
Dear Tim,
Import in seqret was not faster than manual adaptation of the artemis
output file. This is how I did it (no guarantee...):
1) Replace fasta_record with source, keep the right number of spaces
(features start at column 22), add the qualifiers /organism="text"
/mol_type="genomic DNA" (
Hi Jack
Artemis is not really meant as a conversion tool between formats and in
particular EMBL/GenBank to GFF, although it will have a go. You could try
EMBOSS (seqret) to convert. However, it sounds like you have multiple fasta
records in your file which may cause problems if you are writing out
Addition:
For Artemis export to GFF, I changed "fasta_record" to "source", which
is a Feature Key in standard nomenclature*, and added the mandatory
fields /organism= and /mol_type=, but every time I get a message that
the source field cannot be exported.
Is that normal behaviour? Can anyone
Dear all,
I have annotated genome data in Artemis, and I would like to import the
result of that annotation into CLC Bio Genomics Workbench
(http://www.clcbio.com/).
I tried direct import, selected all entries and exported from Artemis to
EMBL, Genbank and Sequin. None of these were recognized by
