Hi Tim,
I finally solved my problem.
I starded to analyze the run_ scripts and I found they are tailored for
csh SHELL based systems. Ubuntu uses bash.
So I changed the line 32 (e.g. in run_blastx):
EXPANDED_DATABASE=`echo echo $DATABASE | /bash/csh -f`
in:
EXPANDED_DATABASE=`echo echo
Hi Stefano
I think you can probably just copy 'etc/run_blastp' from version 7 to
version 8 then.
Regards
Tim
On 30/1/07 16:16, Stefano Ghignone [EMAIL PROTECTED] wrote:
Dear all,
ok...I need an help!
I have an artemis v.7 working on a FedoraCore3 machine, perfectly
integrated
Hi Stefano
No it looks like the script is not getting the database name for some reason
or is loosing it.
The line above the error you have should be:
seq1-out using database swissprot
i.e. should provide the name of the database you are using.
Attached is a run_blastx script that works for
