I've been attempting to curate an annotation from a Maker produced .gff3 using Artemis. I'm having a couple of issues:
1) Whenever a value other than "0" or "." is entered in column 8 (holds "phase" data for CDS features), the feature does not display in the proper reading frame. This only appears to affect the visuals..the feature information appears correct. Editing the visual to produce the correct picture in the correct frame causes the coding region to shift incorrectly. Basically, if the visual is correct, the feature info is wrong, and visa versa. 2) When I save/edit the gff3 (i.e. create or edit features) in Artemis, the file does not re-open properly--the gene models are lost. In addition, once edited, the gff3 cannot be opened in Apollo either. Any help or guidance would be greatly appreciated. Cheers, Shawn Shawn Starkenburg, Ph.D. Genome Sciences Bioscience Division Los Alamos National Laboratory PO Box 1663, MS M888 Los Alamos, NM 87545 sha...@lanl.gov w. 505-664-0338 _______________________________________________ Artemis-users mailing list Artemis-users@sanger.ac.uk http://lists.sanger.ac.uk/mailman/listinfo/artemis-users
