Re: [Artemis-users] artemis inside other software

2011-02-21 Thread Tim Carver
Hi Bernd

Thank you for your message. There are command line options for running
Artemis and setting various display parameters, e.g. you can open sequences
and feature tables from different files from the command line. The options
are documented in the user manual. There is no programmer manual for Artemis
but the majority of the code is well documented. If you download the
software from the Artemis home page or from GitHub you can use the
'Makefile' to generate javadocs.

Regards
Tim


On 2/20/11 8:26 AM, Bernd  Jagla bernd.ja...@pasteur.fr wrote:

 Hi,
 
 I just got aware of the Artemis project and am quite excited about it.
 I am using KNIME (knime.org) a workflow management software that is also
 JAVA based and develop functionality for using KNIME on NGS and HCA
 related problems. My questions would be: is it possible to integrate
 ARTEMIS with other software?
 Is there an API?
 Is there a way control what it is displaying from outside the Artemis
 application (like e.g. IGV)?
 Can you please give me some pointers on where to start looking for further
 instructions (beyond the manual) like some introductions for
 programmers...
 
 Please let me know if you have any other suggestions/comments on this
 project.
 
 Kind regards,
 
 Bernd
 
 
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[Artemis-users] artemis inside other software

2011-02-20 Thread Bernd Jagla
Hi,

I just got aware of the Artemis project and am quite excited about it.
I am using KNIME (knime.org) a workflow management software that is also
JAVA based and develop functionality for using KNIME on NGS and HCA
related problems. My questions would be: is it possible to integrate
ARTEMIS with other software?
Is there an API?
Is there a way control what it is displaying from outside the Artemis
application (like e.g. IGV)?
Can you please give me some pointers on where to start looking for further
instructions (beyond the manual) like some introductions for
programmers...

Please let me know if you have any other suggestions/comments on this
project.

Kind regards,

Bernd


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