It seems the big_blast.pl script cannot find the blastn executable. Do you have
blastn somewhere? If not, download the old blast-package (not blast+) from
NCBI, unpack it, and place the blastn executable in a folder that is in your
path, i.e., a place where scripts or programs can find it. You probably have a
folder called /usr/bin/, try placing it there. Type env (using a terminal
window) to see your path (and a lot of other information).
Cheers,
Henrik
Från: artemis-users-boun...@sanger.ac.uk [artemis-users-boun...@sanger.ac.uk]
f#246;r Tony Tang [ttony...@gmail.com]
Skickat: den 28 april 2011 22:56
Till: artemis-users@sanger.ac.uk
Ämne: [Artemis-users] big_blast
Hi All,
Does any body know how to set up environment for running
big_blast.plhttp://big_blast.pl?
I have installed Pathogen Sequencing Unit internal perl modules and copied
big_blast.plhttp://big_blast.pl into folder modules. There is an error when I
was trying to run the big_blast.plhttp://big_blast.pl.
Can't exec blastn: No such file or directory at
./big_blast.plhttp://big_blast.pl line 489, IN line 2.
Any help will be appreciated.
Thanks,
Tony
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