Re: [Artemis-users] multiple contigs, blast and interproscan

2011-02-16 Thread Tim Carver
Hi Intikhab Artemis can read in the output from blastall when it is run with the Œ-m 8¹ flag to generate the one line per HSP. It then displays each blast HSP as a separate feature. The blast needs to be run on the single fasta sequence of the contigs (rather than a multiple fasta) so that the coo

[Artemis-users] multiple contigs, blast and interproscan

2011-02-16 Thread Dr. Intikhab Alam
Hi, I've got contigs from an assembly where I predicted ORFs and performed blasts against NR, UNIprot etc and also perfomed interproscans. Is there a way to correctly load these results into Artemis? I tried loading all multiple sequences and GFF files with co-ordinates on the genomic context, it