Re: [Artemis-users] ACT comparisons

2011-02-17 Thread Tim Carver
Hi Magdalen

Sorry to hear you are having trouble with WebACT. I have tried it a couple
of times and it is working for me. It may be a temporary glitch or possibly
an issue with the size of the sequence. It may be worth trying again?

Regards
Tim


On 2/16/11 3:34 PM, Bossers, Alex alex.boss...@wur.nl wrote:

 Magdalen,
 not sure if its supported but we successfully use MUMmer locally (or blast+)
 to generate the required comparison files.
 Best wishes,
 Alex
 
 
 Van: artemis-users-boun...@sanger.ac.uk [artemis-users-boun...@sanger.ac.uk]
 namens Magdalen Lindeberg [m...@cornell.edu]
 Verzonden: woensdag 16 februari 2011 15:32
 Aan: artemis-users@sanger.ac.uk
 Onderwerp: [Artemis-users] ACT comparisons
 
 After years of using the ³Generate² feature at WebACT
 http://www.webact.org/WebACT/generate for generating ACT readable comparison
 files, my recent attempts to generate comparisons with this feature have not
 been successful (basically, the comparison generator never concludes the job).
 Fortunately, I can get results with DoubleACT, but the output is not as
 convenient.
 
 Does anyone know if WebACT is still being supported?  No one is responding to
 the ³contact us² link.
 
 thanks,
 Magdalen
 
 Magdalen Lindeberg PhD
 Department of Plant Pathology and Plant-Microbe Interactions
 302A Plant Science Building
 Cornell University
 Ithaca NY 14853
 
 http://pseudomonas-syringae.org
 http://www.citrusgreening.org
 
 
 
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Re: [Artemis-users] ACT comparisons

2011-02-16 Thread Bossers, Alex
Magdalen,
not sure if its supported but we successfully use MUMmer locally (or blast+) to 
generate the required comparison files.
Best wishes,
Alex


Van: artemis-users-boun...@sanger.ac.uk [artemis-users-boun...@sanger.ac.uk] 
namens Magdalen Lindeberg [m...@cornell.edu]
Verzonden: woensdag 16 februari 2011 15:32
Aan: artemis-users@sanger.ac.uk
Onderwerp: [Artemis-users] ACT comparisons

After years of using the “Generate” feature at WebACT 
http://www.webact.org/WebACT/generate for generating ACT readable comparison 
files, my recent attempts to generate comparisons with this feature have not 
been successful (basically, the comparison generator never concludes the job).  
Fortunately, I can get results with DoubleACT, but the output is not as 
convenient.

Does anyone know if WebACT is still being supported?  No one is responding to 
the “contact us” link.

thanks,
Magdalen

Magdalen Lindeberg PhD
Department of Plant Pathology and Plant-Microbe Interactions
302A Plant Science Building
Cornell University
Ithaca NY 14853

http://pseudomonas-syringae.org
http://www.citrusgreening.org



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