Hi Louis You need to read in the bgzip'ed vcf file not the tabix index file. It is expecting a file to be loaded with the suffix .vcf.gz rather than .tbi. It will then automatically look for the index (.tbi) file in the same directory as the VCF file.
Regards Tim On 3/17/12 2:48 PM, "Louis Grandjean" <drlouisgrandj...@hotmail.com> wrote: > Dear All, > > I'm new to Artemis and have had problems reading in vcf files. I've indexed > the vcf files using bgzip and tabix as detailed in the manual and I'm also > using the Artemis developer version 14.0. First I load in the reference embl > file with no problems then go to File > Read VCF and select my .tbi file > output from tabix. However nothing appears on the screen. I'm not sure where > I'm going wrong. Any help would be gratefully appreciated. > > Best wishes > > Louis > _______________________________________________ > Artemis-users mailing list > Artemis-users@sanger.ac.uk > http://lists.sanger.ac.uk/mailman/listinfo/artemis-users _______________________________________________ Artemis-users mailing list Artemis-users@sanger.ac.uk http://lists.sanger.ac.uk/mailman/listinfo/artemis-users
