Re: [Avogadro-devel] [Avogadro-Discuss] XTALOPT hangs if server connection lost

2015-08-20 Thread Ronald Cohen
I switched to the CLI ssh and so far no problems! I guess it is a problem with sshlib. Ron Sent from my iPad On Aug 17, 2015, at 9:41 AM, David Lonie david.lo...@kitware.com wrote: On Fri, Aug 14, 2015 at 4:35 PM, Cohen, Ronald rco...@carnegiescience.edu wrote: I had fixed this in an

Re: [Avogadro-devel] XTALOPT hangs if server connection lost

2015-08-20 Thread Cohen, Ronald
OK--rebuilt everything and trying ssh CLI . Sorry for the noise (flight delay!) Ron --- Ronald Cohen Geophysical Laboratory Carnegie Institution 5251 Broad Branch Rd., N.W. Washington, D.C. 20015 rco...@carnegiescience.edu office: 202-478-8937 skype: ronaldcohen https://twitter.com/recohen3

Re: [Avogadro-devel] [Avogadro-Discuss] XTALOPT hangs if server connection lost

2015-08-20 Thread Cohen, Ronald
No, it is a xtalopt error. There is no problem for any other application or the command line. I suspect the call is timing out (in a very short amount of time) and not trying again. Ron --- Ronald Cohen Geophysical Laboratory Carnegie Institution 5251 Broad Branch Rd., N.W. Washington, D.C.

Re: [Avogadro-devel] XTALOPT hangs if server connection lost

2015-08-20 Thread Cohen, Ronald
I tried building the ssh CLI interface and it builds but fails with: ead is QThread(0x2aa3ca0) avogadro: symbol lookup error: /home/ucfbcoh/lib/avogadro/1_1/contrib/xtalopt.so: undefined symbol: _ZN9OpenBabel12OBConversion11SetInFormatEPNS_8OBFormatE By the way, all the Qt errors make it very

Re: [Avogadro-devel] [Avogadro-Discuss] XTALOPT hangs if server connection lost

2015-08-20 Thread Ronald Cohen
I can do it myself againi guess my changes from some years ago didn't stick. What is needed is to loop with say 60 second sleeps after testing for success from ssh. Even if a server or network is down for hours then xtalopt won't skip a beat and jobs will complete and be tallied from the

Re: [Avogadro-devel] Symmetry element rendering

2015-08-20 Thread Geoffrey Hutchison
First off, a quick introduction to others - Marcus has been working on the libmsym library, which is now being used in Avogadro V1.x for point group symmetry detection and symmetrization. He's been working on what looks like a cool integration for AvoV2... Was wondering if anyone has some