Re: [Avogadro-Discuss] Orbital / density plot in Avogadro

2011-08-24 Thread Jussi Lehtola
On Wed, 24 Aug 2011 10:21:16 -0400 Geoffrey Hutchison wrote: > > However, I am unable to visualize these with Avogadro. When I open > > the cube file all I get is the molecule. I tried the Surfaces > > display type; there the Orbital drop down menu doesn't work (or > > it's empty). > > So to visu

Re: [Avogadro-Discuss] Orbital / density plot in Avogadro

2011-08-24 Thread Geoffrey Hutchison
> However, I am unable to visualize these with Avogadro. When I open the > cube file all I get is the molecule. I tried the Surfaces display type; > there the Orbital drop down menu doesn't work (or it's empty). Oh… I realized my error when I looked at this bug last night. When you wrote, I did a

Re: [Avogadro-Discuss] Orbital / density plot in Avogadro

2011-07-29 Thread GH.net IMAP
> Has anyone had a look at this yet…? Sorry, I've been swamped with a new baby and grant-writing. This weekend and next week, I'll be doing some coding and it's at the top of my list. >From what I could tell, the problem was with Open Babel, not Avogadro. So I'll >start there. Best regards, -G

Re: [Avogadro-Discuss] Orbital / density plot in Avogadro

2011-07-29 Thread Jussi Lehtola
On Tue, 12 Jul 2011 17:29:14 +0300 Jussi Lehtola wrote: > > > To get started, I generated some cube files with Gaussian '09: one > > > with the electronic density, and one with the molecular orbitals > > > of a water molecule (PBEPBE aug-cc-pVTZ). > > > > Actually, I can't access those files -- p

Re: [Avogadro-Discuss] Orbital / density plot in Avogadro

2011-07-12 Thread Jussi Lehtola
On Tue, 12 Jul 2011 09:56:17 -0400 Geoffrey Hutchison wrote: > > orbitals and electron densities. I currently intend to do this by > > implementing output in Gaussian cube format. > > While Cube is an OK format, I strongly suggest using something like > the Gaussian fchk or Molden file for output

Re: [Avogadro-Discuss] Orbital / density plot in Avogadro

2011-07-12 Thread Noel O'Boyle
Can it be true? An Open Source DFT code for small molecules! - Noel On 12 July 2011 14:40, Jussi Lehtola wrote: > Hi, > > > I'm working on implementing some new features in my SCF code called > ERKALE ( http://erkale.googlecode.com ; new developers are warmly > welcome!). Related to this, I

Re: [Avogadro-Discuss] Orbital / density plot in Avogadro

2011-07-12 Thread Geoffrey Hutchison
> orbitals and electron densities. I currently intend to do this by > implementing output in Gaussian cube format. While Cube is an OK format, I strongly suggest using something like the Gaussian fchk or Molden file for output. These simply output the exponents/coefficients of basis sets and MO

[Avogadro-Discuss] Orbital / density plot in Avogadro

2011-07-12 Thread Jussi Lehtola
Hi, I'm working on implementing some new features in my SCF code called ERKALE ( http://erkale.googlecode.com ; new developers are warmly welcome!). Related to this, I would like to visualize e.g. molecular orbitals and electron densities. I currently intend to do this by implementing output in G