Re: [basedb-devel] How to delete a Job that is in "Executing" mode.

2007-09-27 Thread Nicklas Nordborg
vegard nygaard wrote: > I have some jobs I want to delete, but I am not allowed to. I think the > reason is that they are still in "Executing" mode, according to the job > list. > > In reality they are not executing, this is just old trial and error runs of > plug-ins that apparently failed in une

Re: [basedb-devel] Getting normalized data out Base

2007-09-27 Thread Nicklas Nordborg
Peter Mertens wrote: > Dear list, > > again i have another question for you. > > I have developed a normalization plugin for Base. > But now i want this normalized data back out of base to use it in > another application. I wanted to do this using the webservices, since > this is, according to

[basedb-devel] How to delete a Job that is in "Executing" mode.

2007-09-27 Thread vegard nygaard
I have some jobs I want to delete, but I am not allowed to. I think the reason is that they are still in "Executing" mode, according to the job list. In reality they are not executing, this is just old trial and error runs of plug-ins that apparently failed in unexpected ways. I can't find a wa

[basedb-devel] Getting normalized data out Base

2007-09-27 Thread Peter Mertens
Dear list, again i have another question for you. I have developed a normalization plugin for Base. But now i want this normalized data back out of base to use it in another application. I wanted to do this using the webservices, since this is, according to me, the only way. Now i have 2 problems

Re: [basedb-devel] File URL

2007-09-27 Thread Nicklas Nordborg
Peter Mertens wrote: > Dear list, > > i'm working on a plugin that gives the possibility to run the analysis > on another machine (not the one base is installed on). Have you checked out the possiblitity to use Job agents? They can be used to execute any plug-in on a different server. See http

Re: [basedb-devel] Managing Units for Annotation Type in BASE

2007-09-27 Thread Nicklas Nordborg
Philippe wrote: > Hi Nicklas, base-developpers, > > Dominic an myself are currently working on a > MAGE-TAB*(http://www.mged.org/mage-tab/) importer for BASE2. > The format allows specifying Units to qualify descriptors such as > protocol parameter, experimental factors, biomaterial descriptors.

[basedb-devel] File URL

2007-09-27 Thread Peter Mertens
Dear list, i'm working on a plugin that gives the possibility to run the analysis on another machine (not the one base is installed on). In order to download the files (cel and cdf) over http, i need the to retrieve the URL's. Can somebody tell me how to get this? In the documentation i found tha

[basedb-devel] Managing Units for Annotation Type in BASE

2007-09-27 Thread Philippe
Hi Nicklas, base-developpers, Dominic an myself are currently working on a MAGE-TAB*(http://www.mged.org/mage-tab/) importer for BASE2. The format allows specifying Units to qualify descriptors such as protocol parameter, experimental factors, biomaterial descriptors. I can be quite handy for in