Re: [base] Réplicates in base 2

2006-12-08 Thread Nicklas Nordborg
Emmanuel Courcelle wrote: Hello We are trying to create an experiment composed with: -4 slides -3 times each reporter on each slide So, we have up to 12 replicates for each reporter (sometimes less because some flagged spots were filtered out). How to make a final bioassay set with

Re: [base] Location of original source files

2006-12-08 Thread Nicklas Nordborg
Charles Girardot wrote: Hi Nicklas, I might have missed something as I am not using BASE2 now and haven't investigated in details. I have a comment on this thread : Very often people come up with some logics in naming their files and, in the context of re-exporting them (eg,

[base] Conversion from string to int after plate import

2006-12-08 Thread david vilanova
Hi, I'm importing the following plate information through the plate 384_wells import plate. 384_number 384_column 384_row 384_position oligo_id plate_1 1 A A1 SEQ12345 plate_1 2 A A2 SEQ12346 plate_1 3 A A3 SEQ12347 The importing works fine but the row letters are converted into strings and +1

Re: [base] Conversion from string to int after plate import

2006-12-08 Thread david vilanova
Hi, After checking the sql structure of the database I realized that the table PlateMappingDetails contains indeed int values for all fields. I would have imagined that one could eventually use a letter instead of an integer. What do you think ?

Re: [base] Location of original source files

2006-12-08 Thread Keith Ching
There is one place that i found the linkage of the RawBioAssay to the original file.. the job parameters.. when you import data into the RawBioAssay it creates a job that details the RawBioAssay and the file path.. however, users can delete the jobs and thus wipe out the connection.. ( which