Re: [base] Getting Internal File Name

2008-11-26 Thread Nicklas Nordborg
Jari Häkkinen wrote: > Is web services a option for solving Victorias problem? Unfortunately there is no web service that can download a random file. Only data files attached to raw bioassays or array designs can be downloaded and you need to know the ID of the raw bioassay/array design and the

Re: [base] Getting Internal File Name

2008-11-26 Thread Jari Häkkinen
Is web services a option for solving Victorias problem? Jari Nicklas Nordborg wrote: > Offord, Victoria wrote: >> I'm trying to transfer the files held in a project into an external >> system but I require the location the file is stored so that it can be >> passed into a Perl script which will

Re: [base] Getting Internal File Name

2008-11-26 Thread Nicklas Nordborg
Offord, Victoria wrote: > I'm trying to transfer the files held in a project into an external > system but I require the location the file is stored so that it can be > passed into a Perl script which will copy the file. I am unable to get > the location of the file held within the Java 'File' clas

Re: [base] Getting Internal File Name

2008-11-26 Thread Jari Häkkinen
There is an ftp-server extension for BASE, http://baseplugins.thep.lu.se/wiki/net.sf.basedb.ftp Maybe this can help? It should be possible to get Perl to download files using ftp. And the names are the native names, i.e. no translation is needed to the internal name. Jari Offord, Victoria w

Re: [base] Getting Internal File Name

2008-11-26 Thread Offord, Victoria
I'm trying to transfer the files held in a project into an external system but I require the location the file is stored so that it can be passed into a Perl script which will copy the file. I am unable to get the location of the file held within the Java 'File' class because the method getInternal

[base] [basedb-devel] BASE 2.9 has been released

2008-11-26 Thread Bob MacCallum
Lots of exciting stuff to look forward to in this release (from browsing the Trac listing). Will report back with a mini-review after the upgrade. Thanks guys. Nicklas Nordborg writes: > Hello all, > > We are happy to announce the release of BASE 2.9. This is a major > release that adds s

[base] BASE 2.9 has been released

2008-11-26 Thread Nicklas Nordborg
Hello all, We are happy to announce the release of BASE 2.9. This is a major release that adds several new features and bugfixes. For a complete list of changes, see: http://base.thep.lu.se/query?status=closed&milestone=BASE+2.9 IMPORTANT On important change is that BASE now requires