> Hi
> Tried to post this earlier but it didn't seem to work - apologies if
> this is a duplicate message.
>
> We have run into a problem setting up a new root bioassay set - we
> continually get an error message similar to the following: Duplicate
> entry '22-1' for key 'PRIMARY' - (see stack trace below). Initially
> we did not have a reporter map imported for the new array we are using
> and had some problems with that importation - not sure if that would
> affect the root bioassay set as the reporters now seem to be in BASE.
> We are using data output from ImaGene. We are unsure how to address
> this problem and wondered if you have any suggestions.
>
>
> Thanks,
>
> Erin
>
>
>
> Message -- Error: Run plugin: Formula intensity calculator
> javascript:Main.openTabControlHelp('417022294046a3ae', 'main', 'null')
> Subject Error: Run plugin: Formula intensity calculator
>
> From SYSTEM
> Time sent 2012-09-18 14:59:23
> Message Duplicate entry '22-1' for key 'PRIMARY'
>
> net.sf.basedb.core.BaseException: Duplicate entry '22-1' for key
> 'PRIMARY'
> at
> net.sf.basedb.core.QueryExecutor.getFutureResult(QueryExecutor.java:19
> 4)
> at
> net.sf.basedb.core.QueryExecutor.executeUpdate(QueryExecutor.java:105)
> at
> net.sf.basedb.core.hibernate.ExecuteUpdateWork.execute(ExecuteUpdateWo
> rk.java:77)
> at org.hibernate.impl.SessionImpl.doWork(SessionImpl.java:1873)
> at net.sf.basedb.core.HibernateUtil.doJdbcWork(HibernateUtil.java:994)
> at net.sf.basedb.core.PositionBatcher.insert(PositionBatcher.java:251)
> at
> net.sf.basedb.util.IntensityCalculatorUtil.createRootBioAssaySet(Inten
> sityCalculatorUtil.java:208)
> at
> net.sf.basedb.plugins.IntensityCalculatorPlugin.run(IntensityCalculato
> rPlugin.java:259)
> at
> net.sf.basedb.core.PluginExecutionRequest.invoke(PluginExecutionReques
> t.java:110)
> at
> net.sf.basedb.core.InternalJobQueue$JobRunner.run(InternalJobQueue.jav
> a:506)
> at java.lang.Thread.run(Thread.java:619)
> Caused by:
> com.mysql.jdbc.exceptions.jdbc4.MySQLIntegrityConstraintViolationExcep
> tion: Duplicate entry '22-1' for key 'PRIMARY'
> at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native
> Method)
> at
> sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructo
> rAccessorImpl.java:39)
> at
> sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingCo
> nstructorAccessorImpl.java:27)
> at java.lang.reflect.Constructor.newInstance(Constructor.java:513)
> at com.mysql.jdbc.Util.handleNewInstance(Util.java:406)
> at com.mysql.jdbc.Util.getInstance(Util.java:381)
> at com.mysql.jdbc.SQLError.createSQLException(SQLError.java:1015)
> at com.mysql.jdbc.SQLError.createSQLException(SQLError.java:956)
> at com.mysql.jdbc.MysqlIO.checkErrorPacket(MysqlIO.java:3491)
> at com.mysql.jdbc.MysqlIO.checkErrorPacket(MysqlIO.java:3423)
> at com.mysql.jdbc.MysqlIO.sendCommand(MysqlIO.java:1936)
> at
> com.mysql.jdbc.ServerPreparedStatement.serverExecute(ServerPreparedSta
> tement.java:1328)
> at
> com.mysql.jdbc.ServerPreparedStatement.executeInternal(ServerPreparedS
> tatement.java:838)
> at
> com.mysql.jdbc.PreparedStatement.executeUpdate(PreparedStatement.java:
> 2019)
> at
> com.mysql.jdbc.PreparedStatement.executeUpdate(PreparedStatement.java:
> 1937)
> at
> com.mysql.jdbc.PreparedStatement.executeUpdate(PreparedStatement.java:
> 1922)
> at
> com.mchange.v2.c3p0.impl.NewProxyPreparedStatement.executeUpdate(NewPr
> oxyPreparedStatement.java:105)
> at
> net.sf.basedb.core.QueryExecutor$FutureUpdate.call(QueryExecutor.java:
> 269)
> at
> net.sf.basedb.core.QueryExecutor$FutureUpdate.call(QueryExecutor.java:
> 257)
> at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:303)
> at java.util.concurrent.FutureTask.run(FutureTask.java:138)
> at
> java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecu
> tor.java:886)
> at
> java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.
> java:908)
> ... 1 more
>
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