I guess we really should change the compilation
to use '-target 1.6'
Or simply omit it. In general I can think of few scenarios
where you'd want to target an older VM than the one you are
working with (one reason might be compiler fixes that were
not back-ported): that invites the sort of
Java : Java(TM) Platform,
Standard Edition for Business; 1.5.0_16-b02; Sun Microsystems Inc.
java.lang.NoSuchMethodError:
java.util.Arrays.copyOf([Ljava/lang/Object;I)[Ljava/lang/Object;
You're running Java 1.5 but the Array.copyOf methods were
introduced in Java 1.6:
That line of code (IntensityFormula.java:91) was changed in
2.16 so it is not so strange.
I meant I was surprised that this 1.5 VM didn't immediately
reject classes obviously compiled against 1.6. Did you use
the -target 1.5 option in compilation?
-- O.L.
Thanks. Between that and the other thread I am getting
I should be able to work out something.
What about AnnotationSet.getQuery(), though: can't you
search that and then use getItem() to go back to the item?
-- O.L.
Ahah! Now it makes sense. Many thanks. I am writing another
service of my own, i.e., exposing Application.newSession(String,
String, String) and a few related methods and all the methods
in my service have a void return type, so that fits. I was
also wondering why *your* login etc methods echo
I noticed that not all PermissionDeniedException's thrown on
the server side (you can see them in the Tomcat log) are
relayed to the client side as an AxisFault. AFAICT this
affects all such exceptions thrown by Application. Other
instances of a PermissionDeniedException, e.g., when trying
to
'virus_family' has one or more invalid characters.
Only a-z, A-Z, 0-9 and . is allowed.
I think that message comes from a Hibernate query and refers
to a column name used in constraints; check your constraints.
-- O.L.
Ah ok, so BASE has built a constraint involving my new column name?
I would think so, although it's been 6 months since I had wade
into that. Suggestion: turn on full query tracing in the log by
putting all this into your log4j.properties:
# logging queries in BASE
Well, I agree with you that DC-BASE (and Hibernate!) can be
rather user-unfriendly at times but I am myself only a user.
I reported something that helped me once, no more no less.
Regards,
-- O.L.
--
Return on
I tried to create a rawbioassay by simply accepting the defaults
in the wizard (since no field seems to be required). After clicking
on Save I got a popup telling me the rawbioassay was successfully
created but still it did not show up under View - RawBioassays.
What is more I can actually find
That something doesn't show up in the GUI is usually due to
a filter that is active in the list. To clear all filters
select the 'clear filter' option in the 'view/presets' dropdown.
I don't find such a dropdown. Perhaps I should mention that
this is on 2.9.2 and no unfortunately I can't
I am not having much luck installing that plugin. It wants you to
run updatedb.sh. When I do that it says Building database, which
is alarming in and of itself since that suggests it is rebuilding
the db from scratch, which begs the question of whether it is
possible to install that plugin on a
Are there instructions and/or scripts anywhere to assist with the
cloning of a BASE2 instance or is it a use-your-brain-dude kind of
thing? My problem is that I got a dump of a MySQL db but nothing
else and there seem to be a lot of dangling links manifesting
themselves in red-band error
The problem with zipping the BASE tree is that is no guarantee
that all necessary files are under the BASE root. From looking
at base.config there are at least three more roots to consider:
* secondary storage area
* plugins area
* user files area
Any others?
I am experimenting with the BASE2 API. When I call
Application.newSessionControl(null, test1, null);
BASE2 seems to start successfully (BASE is up and running)
but then shuts down immediately (Stopping BASE). What
am I doing wrong?
Thanks,
-- O.L.
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