Re: [base] Lowess normalisation - Block parameter

2009-02-09 Thread Louise Donnison
Great using 1 worked! Thanks From: Nicklas Nordborg To: BASE ML Sent: Sunday, 8 February, 2009 22:58:08 Subject: Re: [base] Lowess normalisation - Block parameter Louise Donnison wrote: > Hi > I have been trying to normalise with block size 48 usi

Re: [base] Lowess normalisation - Block parameter

2009-02-08 Thread Nicklas Nordborg
Louise Donnison wrote: > Hi > I have been trying to normalise with block size 48 using the Lowess > normalization plugin. It does not appear to work for me. > It gives the same result as if I use block size 0. If your array has 48 block on it this is the expected behavior. The parameter tells the

[base] Lowess normalisation - Block parameter

2009-02-06 Thread Louise Donnison
Hi I have been trying to normalise with block size 48 using the Lowess normalization plugin. It does not appear to work for me. It gives the same result as if I use block size 0. I have been looking at LowessNormalisation code. The spot spot data is ofsize 17328 split over 48 blocks. When the cod