Re: [base] high-throughput transcriptome sequencing data

2008-10-22 Thread Bob MacCallum
Hi again, I saved you the trouble of cutting and pasting to make a new ticket: Handling short read transcript sequence data http://base.thep.lu.se/ticket/1153 Is there any way for me to subscribe to this ticket (get email updates when changed)? cheers, Bob. -- Bob MacCallum | VectorBase

Re: [base] high-throughput transcriptome sequencing data

2008-10-21 Thread Jari Häkkinen
Hi Bob, Sorry for not commenting your thoughs on storing sequencing data in BASE. We have discussed it here and will be looking into it later. This will become an issue for us also since we have sequencing equipment generating huge quantities of data. So far we are only getting friendly with

[base] high-throughput transcriptome sequencing data

2008-10-09 Thread Bob MacCallum
I'm just thinking out loud about how to incorporate high throughput transcriptome sequencing data into BASE. It's some way off, but I'm assuming that it will be cheap and quantitative enough to replace arrays at some point during the renewal period of our project (2009-2014). 1. Create an array