Chad Matsalla wrote:
> Greetings,
> 
> I think the subject is quite clear. I have a Raw Bioassay in which the user
> forgot to specify the array design at creation time. The user went on to do
> a bunch of analyses but the experiment validator said the Raw Bioassay had
> no array design. When you edit the Raw Bioassay you are not allowed to
> change the Array Design away from '- none -' because there is no popup box
> there.
> 
> Is there a reason for this?

The reason if that if you have an array design the raw data import will 
verify that the raw data has the same reporters on the same positions as 
the array design has. If this is known then certain optimizations can be 
used in the analysis, ie. we can skip a similar check and don't need to 
remap positions between different raw bioassays. That is why you can't 
change the array design.

I guess that it would be ok to change to an array design that can be 
validated against the raw data, but nobody has never mentioned it before 
and we have not implemented this validation. I have added this as a 
ticket so it doesn't get lost: http://base.thep.lu.se/ticket/583

So, currently your user has two options. Continue without an array 
design or create a new raw bioassay which has an array design and redo 
the analysis.

/Nicklas

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