[base] Tab2MageExporter
Dear team, I install Tab2MageExporter plugin into /base/plugins directory and addition copy Tab2MageExporter.jar and ebi-plugins-utils.jar into /base/www/WEB-INF/lib directory I have an error message, when I export Experiment with Tab2Mage exporter: View job -- Run plugin: Tab2Mage exporter Status Error: Stack trace java.lang.NullPointerException at uk.ac.ebi.nugo.plugins.Tab2MageExporter.run(Tab2MageExporter.java:354) at net.sf.basedb.core.PluginExecutionRequest.invoke(PluginExecutionRequest.java:116) at net.sf.basedb.core.InternalJobQueue$JobRunner.run(InternalJobQueue.java:510) at java.lang.Thread.run(Thread.java:636) Could you, please, tell me what is wrong or what I missed? Regards, Irina -- vRanger cuts backup time in half-while increasing security. With the market-leading solution for virtual backup and recovery, you get blazing-fast, flexible, and affordable data protection. Download your free trial now. http://p.sf.net/sfu/quest-d2dcopy1___ The BASE general discussion mailing list basedb-users@lists.sourceforge.net unsubscribe: send a mail with subject unsubscribe to basedb-users-requ...@lists.sourceforge.net
Re: [base] Tab2MageExporter
On 2011-05-26 07:24, Irina 264 wrote: Dear team, I install Tab2MageExporter plugin into /base/plugins directory and addition copy Tab2MageExporter.jar and ebi-plugins-utils.jar into /base/www/WEB-INF/lib directory Never install the same jar file in two locations. It can result in random failures. I have an error message, when I export Experiment with Tab2Mage exporter: *View job -- Run plugin: Tab2Mage exporter* *Status* Error: *Stack trace* java.lang.NullPointerException at uk.ac.ebi.nugo.plugins.Tab2MageExporter.run(Tab2MageExporter.java:354) at net.sf.basedb.core.PluginExecutionRequest.invoke(PluginExecutionRequest.java:116) at net.sf.basedb.core.InternalJobQueue$JobRunner.run(InternalJobQueue.java:510) at java.lang.Thread.run(Thread.java:636) Could you, please, tell me what is wrong or what I missed? I recommend that you use the Experiment overview first to ensure that there are no error messges and warnings. Select your experiment from the list and then go to the Overview tab and click on the Validate button. The Tab2Mage exporter assumes that your experiment includes a lot of information all the way up to BioSource items. The exception in your case seems to come from not having specified a scan for the raw bioassay. /Nicklas -- vRanger cuts backup time in half-while increasing security. With the market-leading solution for virtual backup and recovery, you get blazing-fast, flexible, and affordable data protection. Download your free trial now. http://p.sf.net/sfu/quest-d2dcopy1 ___ The BASE general discussion mailing list basedb-users@lists.sourceforge.net unsubscribe: send a mail with subject unsubscribe to basedb-users-requ...@lists.sourceforge.net
