Re: [base] basedb-users Digest, Vol 70, Issue 1

2015-03-12 Thread Jari Häkkinen
One source for the problem is that the underlying RMAExpressConsole program doesn't handle ST arrays, or maybe treats ST arrays differently. Have you checked with the author of RMAExpress tool? The se.lu.thep.affymetrix for BASE plug-in and expects the output file from RMAExpressConsole to be

Re: [base] basedb-users Digest, Vol 70, Issue 1

2015-03-12 Thread Jari Häkkinen
On 2015-03-12 09:24, Jari Häkkinen wrote: One source for the problem is that the underlying RMAExpressConsole program doesn't handle ST arrays, or maybe treats ST arrays differently. I meant to say that problem may be with RMAExpressConsole but I don't know. Jari

Re: [base] basedb-users Digest, Vol 70, Issue 1

2015-03-10 Thread Ross Chapman
Hi Jari Thank you for your comments. I am using BASE 2.17.2 which is running on a Linux/Ubuntu server. I have found that RMAExpress runs perfectly with most Affymetrix files, but I get this error when analysing data from Affymetrix GeneChip Human Gene 1.0 ST or Affymetrix GeneChip Mouse Gene