Running base v3.1.1 with mev-launcher-1.9 binary (current base version and
MeV version 4.7.3) on Centos6. Tried to export a bioassay set of two
bioassays to a TDMS file for analysis in MeV and got a unnamed error with
the following stack trace:
java.lang.NullPointerException
at
net.sf.basedb.mev.export.TdmsExporter.addReporterFields(TdmsExporter.java:290)
at
net.sf.basedb.mev.export.TdmsExporter.beginExport(TdmsExporter.java:107)
at
net.sf.basedb.util.export.spotdata.AbstractBioAssaySetExporter.doExport(AbstractBioAssaySetExporter.java:277)
at
net.sf.basedb.mev.plugin.TdmsExporterPlugin.performExport(TdmsExporterPlugin.java:263)
at
net.sf.basedb.core.plugin.AbstractExporterPlugin.run(AbstractExporterPlugin.java:144)
at
net.sf.basedb.core.PluginExecutionRequest.invoke(PluginExecutionRequest.java:116)
at
net.sf.basedb.core.InternalJobQueue$JobRunner.run(InternalJobQueue.java:510)
at java.lang.Thread.run(Thread.java:662)
Is this a user error I can do something about or have I stumbled upon a bug?
The following is unrelated, but I was wondering if reporters were best
imported from a gpr file or GAL file or if there is a difference. I was
also wondering if there was a way to update biological annotations
automatically from SGD.
Oh and a (possible) bug notice: in the *Genepix raw data cy5/cy3 (cy5/cy3)
import configuration* for the *raw bioassay import from file*, I had to
change *Rgn R<superscipt 2>* to *Rgn R2* to get it to work with my grp
extension genepix files.
Thanks in Advance
Steven Fan
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