* System specs
Solaris 10 / SPARC, 6 GB, in a zone
JDK 1.5.0_01
MySQL 4.1.18
Tomcat 5.5
* Problem 1: using binary BASE 2.0
When running the 'updatedb.sh' script, java crashes after building the
initial database:
[0%]Building database
[30%] Database built
to share the specifications and/or will this find its way
into BASE 2 proper some day?
regards,
/Emil
Emil Lundberg / Sysadm
Linnaeus Centre for Bioinformatics
Uppsala University
Reha Yildirimman wrote:
Hello,
using Base2 we are trying to implement the Illumina
I think we're in the minority using BASE as the main engine
behind a public
resource using data from multiple institutions, but so far so
good. One thing
that we've had to retrofit to BASE1 is a summary of expression for
a gene (or
reporter) over all experiments - something that a
developer to
help out with a ticket like R/BioC connectivity? If so, let us know!
best,
/Emil Lundberg, LCB-DWH
http://www.lcb.uu.se/lcbdw.php
-
Take Surveys. Earn Cash. Influence the Future of IT
Join SourceForge.net's Techsay
27 mar 2007 kl. 11.46 skrev Bob MacCallum:
Now I can't speak for the BASE developers, but in my view, plug-ins
are what makes BASE tick, so my advice is to go for the plug-in
rather than the stand-alone app, if feasible. This way, you can make
use of all the BASE facilities for
I haven't installed BASE 2.4 as yet -- will give it a go this
afternoon
and try out the batch importer with it.
I have to admit to not having done any of the fixes/feature
enhancements
to the batch importer that were requested, quite simply because I was
waiting for the
If you want to run it on older hardware (PPC or 32-bit), 10.5 still
helps. I do recall being told that BASE does not actually make use of
Java 6, it's just that they don't test on any older releases anymore,
but I'll let the BASE folks comment on that. You will have to
compile
BASE
