Hi Riccardo,
Since you can't copy the needed software packages directly from one
system to another (even if the systems are identical, they must be
configured/installed to interact properly with the OS), I guess the best
route is to:
1) Install a new empty installation of BASE with the same
Hi Angela,
Work has been going steady forward the last 90 days, and there is an aim
of getting most of the code together by Febuary 23 (the same as BASE 2
RC date).
If there will be a new official 1.2.x release ready by then, a pretty
stable code should be available in the CVS around that ti
Hi Mark,
I'm not using that part of the Array LIMS myself, but I'll give it a
shot anyway:
Are you sure that some of the new protocols you have created has type
set to 'Configuration'?
Hope this helps,
Kjell
mark alston (IFR) wrote:
Sorry for this no-brainer, but it’s the end of the day a
Hi Charles, all,
Yes, I had to do the exact same change a couple of weeks ago! And I also
wondered why I hadn't bumped into the error before when inserting rows.
I may have been some code that was updated and now tried to insert using
the insert statement itself, instead of defaults stated in
t
machine either, a fresh install of 1.2.17. Is the installation an
upgraded one? Maybe there was a problem in the migrate script when the
Feature table was introduced or similar ?
K.
Thanks
Charles
On 11 févr. 06, at 20:14, Kjell Petersen wrote:
Hi Charles, all,
Yes, I had to do the
Hi Audrey,
The BASE MAGE-ML export coding is no ongoing for full steam, so soon the
code below givinmg you trouble should be obsolete. But I'll try to giv
you a couple of hints to help you by.
Audrey Bihouee wrote:
Hi,
Sine I changed my server, I get a java error when I try to export my
d
Hi Audrey,
If a date is optional in the MAGE-ML, it should not be part of the
export if it is set to the default -00-00, and thus this should be
tested for. If the date is mandatory, then a better warning telling wich
BASE item that lacks a realistic date should be issued so it can be
ent
Hi David,
We've uploaded Agilent files to our BASE installasation, and yes the key
issue is to add additional custom columns to hold the values you want to
store. Once additional columns have been added, they appear as other
normal columns throughout the BASE interface, yoy don't need to do
a
The upload limits are set in the php.ini file, the BASE intsallation
documentation (in the tar ball) pin-points the exact parameters in the
PHP section.
After editing php.ini, apache must be restarted for the php module in
apache to read the changes.
Cheers,
Kjell
Zhao, David wrote:
Hi th
riginal Message-----
From: [EMAIL PROTECTED] [mailto:[EMAIL PROTECTED] On Behalf Of Kjell Petersen
Sent: Friday, April 21, 2006 1:37 AM
To: basedb-users@lists.sourceforge.net
Subject: Re: [base] Reporter file Upload (Agilent Chip)
The upload limits are set in the php.ini file, the BASE intsallat
Dear Zong-Pei,
I'll post an answer on the base-devel list.
Cheers,
Kjell
[EMAIL PROTECTED] wrote:
>Dear All,
>
>Our attempt to install the latest CVS of BASE1 (1.2.17 something
>which is downloaded today) on an Opteron box has been unsuccessful.
>Here're some background information:
>
>$ uname
Hi Mark,
You probably have a & sign somewhere in your text that is exported. That
is confusing the XML parser, since the & means something special in XML...
The missing identifier of MAGE-ML is something that I thought was fixed
some time ago, and definitely is fixed in the CVS, which version a
the problem?
>
>Regards,
>Mark
>
>-Original Message-
>From: [EMAIL PROTECTED]
>[mailto:[EMAIL PROTECTED] On Behalf Of Kjell
>Petersen
>Sent: 21 June 2006 11:57
>To: BASE ML
>Subject: Re: [base] mage-ml export gives org.xml.sax.SAXParseException
>
>Hi Mark,
>
&
Hi Carl,
There was a report on this earlier, the line:
qt.setIsBackground(false);
in QuantitationType_package_BASE.java:104 needs to be modified so that
it uses an instance of the Boolean class set to false.
I had been able to compile the code with this error in for some time
using SUN java 1
Hi Steve,
It might look like you've updated to the latest CVS instead of the
official latest release 1.2.17 ?
The error message is related to the code related to MAGE-ML export to be
released as part of 1.2.18. The error message should be harmless, but
shouldn't be there if you've upgraded to
Hi Steve and Nicklas,
Nicklas Nordborg wrote:
> Steve Taylor wrote:
>
>> Hi Kjell,
>>
>>
>>> It might look like you've updated to the latest CVS instead of the
>>> official latest release 1.2.17 ?
>>>
>>> The error message is related to the code related to MAGE-ML export to be
>>> releas
t the chance to share your
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> ___
> The BASE general discussion
Nicklas Nordborg wrote:
>
>> The array design concept was intended to provide a way of checking if
>> the right raw data files are linked with right samples/extracts in the
>> experiment, and that the right data is analyzed in experiment. It seems
>> that it might not be the case for Illumina.
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