dear base,
i am trying to compile (with the distributed make) a slightly modified
(Plier.java) affy plugin (v 0.7) and i get a long (69) list of errors,
mostly
Syntax error, annotations are only available if source level is 5.0
any suggestion? apologies if in the wrong list
thanks
sergio
javac -cp /usr/local/base/www/WEB-INF/lib/BASE2Core.jar:.build
.build/se/lu/thep/affymetrix/AbstractExternalBinaryPlugin.java
----------
1. ERROR in .build/se/lu/thep/affymetrix/AbstractExternalBinaryPlugin.java
(at line 87)
@SuppressWarnings("unchecked")
^^^^^^^^^^^^^^^^^
Syntax error, annotations are only available if source level is 5.0
----------
2. ERROR in .build/se/lu/thep/affymetrix/AbstractExternalBinaryPlugin.java
(at line 92)
List<Throwable> errors = validateRequestParameters
^^^^
The type List is not generic; it cannot be parameterized with arguments
<Throwable>
----------
3. ERROR in .build/se/lu/thep/affymetrix/AbstractExternalBinaryPlugin.java
(at line 92)
List<Throwable> errors = validateRequestParameters
^^^^^^^^^
Syntax error, parameterized types are only available if source level is
5.0
----------
4. ERROR in .build/se/lu/thep/affymetrix/AbstractExternalBinaryPlugin.java
(at line 110)
List<RawBioAssay> rawBioAssays =
^^^^
The type List is not generic; it cannot be parameterized with arguments
<RawBioAssay>
----------
5. ERROR in .build/se/lu/thep/affymetrix/AbstractExternalBinaryPlugin.java
(at line 110)
List<RawBioAssay> rawBioAssays =
^^^^^^^^^^^
Syntax error, parameterized types are only available if source level is
5.0
----------
6. ERROR in .build/se/lu/thep/affymetrix/AbstractExternalBinaryPlugin.java
(at line 111)
(List<RawBioAssay>)request.getParameterValues("rawBioAssays");
^^^^^^^^^^^^^^^^^
The type List is not generic; it cannot be parameterized with arguments
<RawBioAssay>
----------
7. ERROR in .build/se/lu/thep/affymetrix/AbstractExternalBinaryPlugin.java
(at line 111)
(List<RawBioAssay>)request.getParameterValues("rawBioAssays");
^^^^^^^^^^^
Syntax error, parameterized types are only available if source level is
5.0
----------
8. ERROR in .build/se/lu/thep/affymetrix/AbstractExternalBinaryPlugin.java
(at line 112)
for (RawBioAssay rba : rawBioAssays)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Syntax error, 'for each' statements are only available if source level is
5.0
----------
9. ERROR in .build/se/lu/thep/affymetrix/AbstractExternalBinaryPlugin.java
(at line 123)
storeValue(job, request, nameParameter);
^^^^^^^^^^^^^
nameParameter cannot be resolved
----------
10. ERROR in
.build/se/lu/thep/affymetrix/AbstractExternalBinaryPlugin.java
(at line 124)
storeValue(job, request, experimentParameter);
^^^^^^^^^^^^^^^^^^^
experimentParameter cannot be resolved
----------
11. ERROR in
.build/se/lu/thep/affymetrix/AbstractExternalBinaryPlugin.java
(at line 125)
storeValues(job, request, rawBioAssaysParameter);
^^^^^^^^^^^^^^^^^^^^^
rawBioAssaysParameter cannot be resolved
----------
12. ERROR in
.build/se/lu/thep/affymetrix/AbstractExternalBinaryPlugin.java
(at line 135)
response.setError(e.getMessage(), Arrays.asList(e));
^^^^^^
The method asList(Object[]) in the type Arrays is not applicable for the
arguments (Throwable)
----------
13. ERROR in
.build/se/lu/thep/affymetrix/AbstractExternalBinaryPlugin.java
(at line 155)
List<PluginParameter<?>> parameters = new
ArrayList<PluginParameter<?>>();
^^^^^^^^^^^^^^^
Syntax error, parameterized types are only available if source level is
5.0
----------
14. ERROR in
.build/se/lu/thep/affymetrix/AbstractExternalBinaryPlugin.java
(at line 155)
List<PluginParameter<?>> parameters = new
ArrayList<PluginParameter<?>>();
^^^^^^^^^^^^^^^
The type PluginParameter is not generic; it cannot be parameterized with
arguments <?>
----------
15. ERROR in
.build/se/lu/thep/affymetrix/AbstractExternalBinaryPlugin.java
(at line 155)
List<PluginParameter<?>> parameters = new
ArrayList<PluginParameter<?>>();
^^^^^^^^^^^^^^^
The type PluginParameter is not generic; it cannot be parameterized with
arguments <?>
----------
16. ERROR in
.build/se/lu/thep/affymetrix/AbstractExternalBinaryPlugin.java
(at line 155)
List<PluginParameter<?>> parameters = new
ArrayList<PluginParameter<?>>();
^^^^^^^^^^^^^^^
Syntax error, parameterized types are only available if source level is
5.0
----------
17. ERROR in
.build/se/lu/thep/affymetrix/AbstractExternalBinaryPlugin.java
(at line 157)
experimentType = new
ItemParameterType<Experiment>(Experiment.class, null,
^^^^^^^^^^^^^^
experimentType cannot be resolved
----------
18. ERROR in
.build/se/lu/thep/affymetrix/AbstractExternalBinaryPlugin.java
(at line 157)
experimentType = new
ItemParameterType<Experiment>(Experiment.class, null,
^^^^^^^^^^^^^^^^^
The type ItemParameterType is not generic; it cannot be parameterized with
arguments <Experiment>
----------
19. ERROR in
.build/se/lu/thep/affymetrix/AbstractExternalBinaryPlugin.java
(at line 157)
experimentType = new
ItemParameterType<Experiment>(Experiment.class, null,
^^^^^^^^^^
Syntax error, parameterized types are only available if source level is
5.0
----------
20. ERROR in
.build/se/lu/thep/affymetrix/AbstractExternalBinaryPlugin.java
(at line 159)
experimentParameter = new PluginParameter<Experiment>(
^^^^^^^^^^^^^^^^^^^
experimentParameter cannot be resolved
----------
21. ERROR in
.build/se/lu/thep/affymetrix/AbstractExternalBinaryPlugin.java
(at line 159)
experimentParameter = new PluginParameter<Experiment>(
^^^^^^^^^^^^^^^
The type PluginParameter is not generic; it cannot be parameterized with
arguments <Experiment>
----------
22. ERROR in
.build/se/lu/thep/affymetrix/AbstractExternalBinaryPlugin.java
(at line 159)
experimentParameter = new PluginParameter<Experiment>(
^^^^^^^^^^
Syntax error, parameterized types are only available if source level is
5.0
----------
23. ERROR in
.build/se/lu/thep/affymetrix/AbstractExternalBinaryPlugin.java
(at line 161)
experimentType);
^^^^^^^^^^^^^^
experimentType cannot be resolved
----------
24. ERROR in
.build/se/lu/thep/affymetrix/AbstractExternalBinaryPlugin.java
(at line 162)
parameters.add(experimentParameter);
^^^^^^^^^^^^^^^^^^^
experimentParameter cannot be resolved
----------
25. ERROR in
.build/se/lu/thep/affymetrix/AbstractExternalBinaryPlugin.java
(at line 163)
parameters.add(nameParameter);
^^^^^^^^^^^^^
nameParameter cannot be resolved
----------
26. ERROR in
.build/se/lu/thep/affymetrix/AbstractExternalBinaryPlugin.java
(at line 168)
ItemQuery<RawBioAssay> rawBioAssayQuery =
experiment.getRawBioAssays();
^^^^^^^^^
The type ItemQuery is not generic; it cannot be parameterized with
arguments <RawBioAssay>
----------
27. ERROR in
.build/se/lu/thep/affymetrix/AbstractExternalBinaryPlugin.java
(at line 168)
ItemQuery<RawBioAssay> rawBioAssayQuery =
experiment.getRawBioAssays();
^^^^^^^^^^^
Syntax error, parameterized types are only available if source level is
5.0
----------
28. ERROR in
.build/se/lu/thep/affymetrix/AbstractExternalBinaryPlugin.java
(at line 172)
List<RawBioAssay> rawBioAssays = new ArrayList<RawBioAssay>(
^^^^
The type List is not generic; it cannot be parameterized with arguments
<RawBioAssay>
----------
29. ERROR in
.build/se/lu/thep/affymetrix/AbstractExternalBinaryPlugin.java
(at line 172)
List<RawBioAssay> rawBioAssays = new ArrayList<RawBioAssay>(
^^^^^^^^^^^
Syntax error, parameterized types are only available if source level is
5.0
----------
30. ERROR in
.build/se/lu/thep/affymetrix/AbstractExternalBinaryPlugin.java
(at line 172)
List<RawBioAssay> rawBioAssays = new ArrayList<RawBioAssay>(
^^^^^^^^^
The type ArrayList is not generic; it cannot be parameterized with
arguments <RawBioAssay>
----------
31. ERROR in
.build/se/lu/thep/affymetrix/AbstractExternalBinaryPlugin.java
(at line 172)
List<RawBioAssay> rawBioAssays = new ArrayList<RawBioAssay>(
^^^^^^^^^^^
Syntax error, parameterized types are only available if source level is
5.0
----------
32. ERROR in
.build/se/lu/thep/affymetrix/AbstractExternalBinaryPlugin.java
(at line 174)
rawBioAssaysType = new
ItemParameterType<RawBioAssay>(RawBioAssay.class,
^^^^^^^^^^^^^^^^
rawBioAssaysType cannot be resolved
----------
33. ERROR in
.build/se/lu/thep/affymetrix/AbstractExternalBinaryPlugin.java
(at line 174)
rawBioAssaysType = new
ItemParameterType<RawBioAssay>(RawBioAssay.class,
^^^^^^^^^^^^^^^^^
The type ItemParameterType is not generic; it cannot be parameterized with
arguments <RawBioAssay>
----------
34. ERROR in
.build/se/lu/thep/affymetrix/AbstractExternalBinaryPlugin.java
(at line 174)
rawBioAssaysType = new
ItemParameterType<RawBioAssay>(RawBioAssay.class,
^^^^^^^^^^^
Syntax error, parameterized types are only available if source level is
5.0
----------
35. ERROR in
.build/se/lu/thep/affymetrix/AbstractExternalBinaryPlugin.java
(at line 177)
rawBioAssaysParameter = new PluginParameter<RawBioAssay>(
^^^^^^^^^^^^^^^^^^^^^
rawBioAssaysParameter cannot be resolved
.................
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