[base] Illumina BGX reporter importer issue

2011-02-10 Thread Thomas Person
Howdy all, I have a fresh brand new a brand new installation of Base 2.16.1, on MySQL 5.1.41, on Ubuntu 10.04.1, with Tomcat 6.0.24, and 1.6 of the illumina plugin installed. When attempting to import the BGX file it fails with error could not execute query on line 10 in file

Re: [base] Illumina BGX reporter importer issue

2011-02-11 Thread Thomas Person
to the original installation dir to run the updatedb.sh. Thanks again! Thomas From: Nicklas Nordborg [nick...@thep.lu.se] Sent: Friday, February 11, 2011 4:09 AM To: BASE ML Subject: Re: [base] Illumina BGX reporter importer issue On 2011-02-10 21:00, Thomas Person

[base] Illumina Bead Summary importer

2011-02-11 Thread Thomas Person
Howdy all, I'm still having issues with the Illumina Plug in, When running the job the summary window gives: Bead Summary importer Executing: New raw bioassay -parsed 93094 lines in 2 files Preparing database for import... Then eventually crashes with OutOfMemoryErrror: Java heap space.

Re: [base] Illumina Bead Summary importer

2011-02-14 Thread Thomas Person
. Thanks again Thomas From: Nicklas Nordborg [nick...@thep.lu.se] Sent: Monday, February 14, 2011 1:37 AM To: BASE ML Subject: Re: [base] Illumina Bead Summary importer On 2011-02-11 23:23, Thomas Person wrote: Howdy all, I'm still having issues

[base] Base 1.2 plugin - Virtual Array -1.1

2011-03-08 Thread Thomas Person
Howdy All, I'm attempting to install the Virtual Array 1.1 plugin on my Base 2.15 server. I get two sets of errors. ( I was able to install the Center-2.1 Plugin with no error). First is: 1. null java.lang.NullPointerException ...at

Re: [base] Base 1.2 plugin - Virtual Array -1.1

2011-03-10 Thread Thomas Person
should be shared appropriately. Also, Virtual array works only on 2-channel data. Jari On 2011-03-10 17.25, Thomas Person wrote: Thanks! That change allows installation but once I atmpt to use the plugin, by clicking on the Run an Analysis Plugin icon when looking at an experiment under

Re: [base] Base 1.2 plugin - Virtual Array -1.1

2011-03-11 Thread Thomas Person
Ok, I guess I'm missing something in the configuration of the plugin, for all the plugins associated with the Base1PluginExecuter. If i simply create the plugin under the Base1PluginExecuter but then not configure it, then I am given the option under the drop down to run it when attempting Run

Re: [base] Base 1.2 plugin - Virtual Array -1.1

2011-03-16 Thread Thomas Person
, Thomas On 03/14/2011 07:27 AM, Nicklas Nordborg wrote: On 2011-03-11 18:13, Thomas Person wrote: Ok, I guess I'm missing something in the configuration of the plugin, for all the plugins associated with the Base1PluginExecuter. If i simply create the plugin under the Base1PluginExecuter