Hi everyone,
Thanks for the advice. They were really helpful. I have tried a different
way of approaching my problem and it's now working. However, I do
appreaciate all the suggestions that you have provided me.
Henry
On Mon, 12 Nov 2001, mark crowe (JIC) wrote:
> Hi Henry
>
> Have you looked
Hi Henry
Have you looked at using substr to take each octamer from the start for the
sequence? It's probably a lot more efficient than splitting it into an array
and taking the first 8 bases each time (althought I'm pretty sure that was
exactly the way I did my first DNA scripts too :-)
Also, if
Andrea Holstein wrote:
>
> Henry Hung-Yung Wang wrote:
> >
> > @dna=split (//, $dna);
>
> What's your regexp to split.
> split //, $dna uses the last regexp used in the program.
> Perhaps you meant split /\w/, $dna ?!
Are you sure?
$ perl -le'$_ = "This is a test of split."; print "Found" if /
Henry Hung-Yung Wang wrote:
> I have just written some codes, but they are not doing what I wanted them
> to do. Here are the codes:
>
> @motif= ('ACGTACGT', '', 'CCGGCCGG', 'GGCCGGCC');
>
> print "Please enter sequences to be examined:\n\n";
> $dna=; chomp $dna;
>
> @dna=split (//, $dn
Henry Hung-Yung Wang wrote:
>
> I have just written some codes, but they are not doing what I wanted them
> to do. Here are the codes:
>
> @motif= ('ACGTACGT', '', 'CCGGCCGG', 'GGCCGGCC');
>
> print "Please enter sequences to be examined:\n\n";
> $dna=; chomp $dna;
>
> @dna=split (//,
