Hi,
I discovered the following problem in the geno() elements of the VCF object
when I load multiple regions from a .vcf file:
## Correct
tmp = readVcf(system.file(extdata, chr22.vcf.gz,
package=VariantAnnotation), hg19)[1:10]
geno(tmp)$GT
HG00096 HG00097 HG00099 HG00100 HG00101
Hi Moritz,
Thanks for the bug report and suggested fix. The patch has been applied
to 1.4.10 in release and 1.5.42 in devel.
Valerie
On 03/05/2013 07:05 AM, Moritz Gerstung wrote:
Hi,
I discovered the following problem in the geno() elements of the VCF object
when I load multiple regions
I'm having a similar problem with my package, CoGAPS, which Is giving a warning
for .path.package that does not appear to be anywhere in my code, nor does it
depend on Biobase. Any suggestions would be greatly appreciated!
Elana
WARNING: E-mail sent over the Internet is not secure.
On Tue, Mar 5, 2013 at 1:29 PM, Elana Fertig ejfer...@jhmi.edu wrote:
I'm having a similar problem with my package, CoGAPS, which Is giving a
warning for .path.package that does not appear to be anywhere in my code, nor
does it depend on Biobase. Any suggestions would be greatly appreciated!
