Re: [Bioc-devel] rGADEM crash

2013-03-27 Thread Gustavo Fernández Bayón
Hi Robert. This is what makes these lists worth it. People like you. Thank you very much for the effort you have taken writing this tutorial. Of course I am putting it into practice right now. Problem is, rGADEM looks like a big monster to me. ;) Regards, Gus On 26/03/13 16:51, Robert

[Bioc-devel] SANTA Package Now Available

2013-03-27 Thread Cornish, Alexander
Hi Bioc-develers, A quick note to say that the SANTA package is now publicly available. SANTA (Spatial Analysis of NeTwork Associations) provides methods for measuring the strength of association between a network and a phenotype. It does this by measuring clustering of the phenotype across

[Bioc-devel] Fwd: Fwd: [biocore] show for GRanges

2013-03-27 Thread Valerie Obenchain
Hi Vince, Martin forwarded your message about allowing more control over the show method. There are now 2 global options that control the number of lines displayed in the head and tail: showHeadLines showTailLines When set, these options affect GenomicRanges, GappedAlignments, Ranges and

[Bioc-devel] Preparing package release notes

2013-03-27 Thread Gordon K Smyth
Hi Dan, You say that the notes will be collated no later than Monday, but that suggests it could be earlier. What's the latest day we can continue to make edits for NEWS.Rd and other documentation for the coming release? Thanks a lot Gordon Date: Tue, 26 Mar 2013 13:59:17 -0700 From: Dan

Re: [Bioc-devel] Preparing package release notes

2013-03-27 Thread Dan Tenenbaum
On Wed, Mar 27, 2013 at 1:37 PM, Gordon K Smyth sm...@wehi.edu.au wrote: Hi Dan, You say that the notes will be collated no later than Monday, but that suggests it could be earlier. What's the latest day we can continue to make edits for NEWS.Rd and other documentation for the coming