Hi Gordon,
I am currently working on some code that would benefit from having
direct access to the code in edgeR::glmLRT that handles reparametrizing
the design matrix so that the N linearly independent components of the
specified contrasts are represented in the first N columns of the design
My impression is that org-mode was designed for very general purposes,
and it might be too general for R package vignettes, so is Dexy. For
vignettes, we use only one language (R) and one document format
(historically LaTeX, and nowadays also Markdown/HTML) in most cases.
Multiple input/output
