Re: [Bioc-devel] VariantAnnotation: writeVcf fails for factors with unused levels

2014-02-06 Thread Julian Gehring
Hi Michael, Thanks for the fast patching. However, going a step further and trying to read the VCF again fails (with VariantAnnotation_1.9.35 ). I'm not sure if this is related to the same issue. #+BEGIN_SRC R library(VariantAnnotation) example(VRanges) writeVcf(vr, out.vcf) ## works

Re: [Bioc-devel] VariantAnnotation: writeVcf fails for factors with unused levels

2014-02-06 Thread Michael Lawrence
Hi Julian, Thanks for this one. It was a bug in Rsamtools, now fixed in devel, version 1.15.27. I'll leave it to Martin/Val to OK it and push to release. Michael On Thu, Feb 6, 2014 at 1:46 AM, Julian Gehring julian.gehr...@embl.dewrote: Hi Michael, Thanks for the fast patching. However,