When I re-index Rsamtools::extdata/ex1.bam I get a different and
larger index file:
bam <- system.file("extdata", "ex1.bam", package="Rsamtools")
bai <- system.file("extdata", "ex1.bam.bai", package="Rsamtools")
# Reindex
bam2 <- basename(bam)
file.copy(bam, bam2)
bai2 <- Rsamtools::indexBam(bam2
Forgot to CC bioc-devel.
> > Hi Dan,
> >
> > - Original Message -
> > > From: "Dan Gatti"
> > > To: bioc-devel@r-project.org
> > > Sent: Friday, April 18, 2014 9:32:12 AM
> > > Subject: [Bioc-devel] New package version and BiocCheck
> > >
> > > I'm trying to submit a new package. I have
Thanks, Martin!
Yes, it was '%in%' method that failed.
I guess it is not a good idea to define the 'duplicated S4 class ' in
these two closely related packages anyway.
So we decided to move 'curv1Filter' and 'curv2Filter' from 'flowCore'
to 'flowStats' instead(leaving 'norm2Filter' untouched).
Hi Dan,
- Original Message -
> From: "Dan Gatti"
> To: bioc-devel@r-project.org
> Sent: Friday, April 18, 2014 9:32:12 AM
> Subject: [Bioc-devel] New package version and BiocCheck
>
> I'm trying to submit a new package. I have set the version number to
> 0.99.0 as indicated at
> http://w
I'm trying to submit a new package. I have set the version number to 0.99.0 as
indicated at http://www.bioconductor.org/developers/package-submission/ .
However, I get a warning from BiocCheck that says:
* Checking new package version number...
* RECOMMENDED: y of x.y.z version should b
On 04/17/2014 04:43 PM, Mike wrote:
I am in the processing of deprecating 'curv2Filter', 'curv1Filter' and
'norm2filter' in 'flowCore' and make these three filters available in
'flowStats'.
Here is what I am trying to do:
1. add warning message in 'flowCore' through '.Deprecate()'
2. copy the S4
