Hi Leonardo --
On 07/07/2014 03:27 PM, Leonardo Collado Torres wrote:
Hello BioC-devel list,
I am currently confused on a namespace issue which I haven't been able
to solve. To reproduce this, I made the simplest example I thought of.
Step 1: make some toy data and save it on your desktop
Hi guys,
On 07/08/2014 05:29 AM, Michael Lawrence wrote:
This is why I tell people not to use require(). But what's with needing to
load IRanges to subset an Rle? Is that temporary?
Very temporary. The source code of the extractROWS and replaceROWS
methods for Rle objects actually contains
Hi,
On 05/13/2014 01:15 AM, Julian Gehring wrote:
Hi,
In summary, would it be feasible to add to 'GenomicRanges'?
1) A 'granges(x, use.mcols=FALSE, ...)' method with signature 'GRanges'
that converts to a 'GRanges' object and optionally drops the mcols (if
'use.mcols' is TRUE)
Will do.
On 07/08/2014 11:29 AM, Michael Lawrence wrote:
On Tue, Jul 8, 2014 at 10:36 AM, Julian Gehring julian.gehr...@embl.de
wrote:
Hi Herve,
2) A 'dropMcols' or 'dropmcols' method with signature 'GRanges' that is
a wrapper for
mcols(x) - NULL
How about setMcols(), which is more general
The recent TranscriptDb thread reminded me of a question: are there
plans (or am I missing the function) to easily get a TranscriptDb out
of the AnnotationHub objects? It would be great to have a preprocessed
Ensembl txdb like we have for UCSC.
ah - AnnotationHub()
gr -
Hi Michael,
On 07/08/2014 12:11 PM, Michael Love wrote:
The recent TranscriptDb thread reminded me of a question: are there
plans (or am I missing the function) to easily get a TranscriptDb out
of the AnnotationHub objects? It would be great to have a preprocessed
Ensembl txdb like we have for
