Hi Stephanie,
I am using rss2email (
http://www.allthingsrss.com/rss2email/getting-started-with-rss2email/), a
script that I installed to track my package feed, and that is run by my
Windows task scheduler every day, to send me the RSS news in an email (not
as an RSS feed per se)
Now, just like
Hi,
The conversion from a 'VCF' to 'VRanges' object fails if an INFO field
with multiple values for different ALT alleles is present:
Here an example VCF entry for which this fails (line 71151250 in
'ALL.wgs.phase3_shapeit2_mvncall_integrated_v5.20130502.sites.vcf.gz'
, taken from
- Original Message -
From: Kevin Rue-Albrecht kevin@ucdconnect.ie
To: Stephanie M. Gogarten sdmor...@u.washington.edu
Cc: bioc-devel@r-project.org, Dan Tenenbaum dtene...@fredhutch.org
Sent: Wednesday, December 3, 2014 3:09:58 AM
Subject: Re: [Bioc-devel] RSS package feeds not
Looks like an issue when expand()ing the VCF. Maybe Val could take a look?
On Wed, Dec 3, 2014 at 7:39 AM, Julian Gehring julian.gehr...@embl.de
wrote:
Hi,
The conversion from a 'VCF' to 'VRanges' object fails if an INFO field
with multiple values for different ALT alleles is present:
Here
Dear Joachim,
thank you for reporting the issue with using EBImage in your package!
Martin, Dan: many thanks for digging into the problem and for suggesting
solutions to overcome it.
I had a look into this as well and could reproduce the issue. I can also
confirm that it occurs under R 3.1.2
- Original Message -
From: Dan Tenenbaum dtene...@fredhutch.org
To: Kevin Rue-Albrecht kevin@ucdconnect.ie
Cc: bioc-devel@r-project.org
Sent: Wednesday, December 3, 2014 7:49:10 AM
Subject: Re: [Bioc-devel] RSS package feeds not updated
- Original Message -
Hi Julian,
many thanks for the kind explanation it was very useful.
I will use your suggestion also because I am working only with
toplevel chromosomes.
Cheers
Raf
Hi Raffaele,
Ignore my last post completely, it was overly optimistic:
The 'BSgenome.Hsapiens.NCBI.GRCh38' package contains the
