Hi,
I am trying to build a genome which is not listed in BSgenome but
unfortunately getting following error at *R CMD check tarball* level:
* installing *source* package ‘BSgenome.Ntabacum.SOLG.K326’ ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
**
The two data structures do not encode the same information. Coercion to VCF
forms a rectangular matrix: position+alt by sample. There is no standard
way to encode that a given cell in that matrix is absent, so coercion to
VRanges simply maps each cell to an element. One could imagine using the
.
Hi Jelle,
Thank you for your patience in waiting for my answer here. It took me a
lot longer to properly test and validate this than I initially expected.
So if you look at amigo you can see these graph views that show you what
the current terms up and downstream of a given GO term should
nice. I will play around with this. thanks Gabe!
On Fri, Dec 5, 2014 at 6:37 PM, Gabe Becker becker.g...@gene.com wrote:
Hey guys,
Surgically removed from promptClass:
classInSig - function(g, where, cl) {
cl %in% unique(unlist(findMethods(g, where)@signatures))
}
