Thanks a lot Dan for quickly addressing this. BiocCheck is now passing for
the package. I have integrated instruction to install ransampl and GSL. Is
it obvious that user will include their library path to the GCC flags? In
any case I have added an example Makevars too, to do this.
thanks
avi
On
I don't think it has been addressed yet in the later commits of R-devel.
And that piece of code in flowCore package was written long time ago and
there is nothing wrong with it as far as I can see.
Mike
On 01/20/2015 05:06 PM, Dan Tenenbaum wrote:
I'm not sure if you were implying that this ha
- Original Message -
> From: "Dan Tenenbaum"
> To: "Mike"
> Cc: Bioc-devel@r-project.org
> Sent: Tuesday, January 20, 2015 5:01:52 PM
> Subject: Re: [Bioc-devel] Latest R-devel revision breaks flowCore and other
> flow packages
>
> Hi Mike,
>
> - Original Message -
> > F
Hi Mike,
- Original Message -
> From: "Mike"
> To: Bioc-devel@r-project.org
> Cc: "Dan Tenenbaum"
> Sent: Tuesday, January 20, 2015 4:56:43 PM
> Subject: [Bioc-devel] Latest R-devel revision breaks flowCore and other flow
> packages
>
> Dan,
>
> First of all, Thanks to the bioconduct
Dan,
First of all, Thanks to the bioconductor |docker container| project that
allows me to quickly troubleshoot within the exactly same environment
that |bioc| has.
Here is the |initialize|method for |parameterFilter| which causes the
various errors from flow package vignettes.
|setMethod("in
- Original Message -
> From: "avinash sahu"
> To: bioc-devel@r-project.org
> Sent: Tuesday, January 20, 2015 8:49:06 AM
> Subject: [Bioc-devel] release new package bioccheck failing
>
> Hi All,
>
> I am trying to release a package https://github.com/vinash85/GOAL in
> bioconductor. But
- Original Message -
> From: "avinash sahu"
> To: bioc-devel@r-project.org
> Sent: Tuesday, January 20, 2015 8:49:06 AM
> Subject: [Bioc-devel] release new package bioccheck failing
>
> Hi All,
>
> I am trying to release a package https://github.com/vinash85/GOAL in
> bioconductor. But
Hi All,
I am trying to release a package https://github.com/vinash85/GOAL in
bioconductor. But BiocCheck is failing, however it only failing in linux
and not in MAC. And I cannot figure out reason. The package is uses Rcpp.
Both build, CHECK is passing in linux and mac.
I am using latest R (3.1.2)
