[Bioc-devel] BioC 3.1 branch created

2015-04-16 Thread Dan Tenenbaum
The BioC 3.1 branch is now ready. Remember, you always have access to 2 versions of your package: the release and the devel versions. Right now the release version of your package (which is not officially released yet but will be tomorrow if everything goes well) is in the 3.1 branch and

Re: [Bioc-devel] BioC 3.1 branch created

2015-04-16 Thread Dan Tenenbaum
- Original Message - From: Henrik Bengtsson henrik.bengts...@ucsf.edu To: Dan Tenenbaum dtene...@fredhutch.org Cc: bioc-devel bioc-devel@r-project.org Sent: Thursday, April 16, 2015 6:57:45 PM Subject: Re: [Bioc-devel] BioC 3.1 branch created On Thu, Apr 16, 2015 at 1:23 PM, Dan

Re: [Bioc-devel] BioC 3.1 branch created

2015-04-16 Thread Henrik Bengtsson
On Thu, Apr 16, 2015 at 1:23 PM, Dan Tenenbaum dtene...@fredhutch.org wrote: The BioC 3.1 branch is now ready. Remember, you always have access to 2 versions of your package: the release and the devel versions. Right now the release version of your package (which is not officially released

[Bioc-devel] Update GSEABase to support new MSigDB collection in v5.0

2015-04-16 Thread Steve Lianoglou
Howdy, It was recently brought to my attention that there is a new h collection in MSigDB v5.0: http://www.broadinstitute.org/gsea/msigdb/genesets.jsp?collection=H Here's a diff against RELEASE that I think should do the trick. There are some spurious +/- entries here because (I think) my

[Bioc-devel] Important: Bioconductor 3.1 branch to be created today - do not commit during this time

2015-04-16 Thread Dan Tenenbaum
Hello BioC developers, We will be creating the Bioconductor 3.1 branch today at 12:30 PM Seattle time. (19:30 UTC). This is about an hour from now. Please stop all commits to trunk before 12:30PM and do not resume until further notice. We will send another email when it is OK to resume