Re: [Bioc-devel] exptData(SummarizedExperiment)

2015-05-12 Thread Hervé Pagès
SummarizedExperiment was just an example. I agree it can be a little challenging for end users to know where to find a particular functionality but I'm not sure about using meta packages to address that. At least I feel we should probably avoid creating new meta packages out of the blue, with

Re: [Bioc-devel] exptData(SummarizedExperiment)

2015-05-12 Thread Michael Lawrence
It's more general than SummarizedExperiment. I think people would appreciate a simple way to load the core, without having to remember, for example, that VCF reading is in VariantAnnotation. On Mon, May 11, 2015 at 9:51 PM, Hervé Pagès hpa...@fredhutch.org wrote: Hi Michael, On 05/11/2015

Re: [Bioc-devel] exptData(SummarizedExperiment)

2015-05-12 Thread Vincent Carey
Agreed that the workflow vehicle should get more attention. Do all workflows correspond to packages? On Tue, May 12, 2015 at 7:31 PM, Michael Lawrence lawrence.mich...@gene.com wrote: I like the idea of having multiple, domain-specific cores. Those could also serve as a vehicle for