I've also encoundered another problem, this time I believe related to a
change the the frma package which requires a corresponding change in the
frmaTools package. Apparently frma has added a check for equality of
probe names in various places, and frmaTools does not store these names,
which
Actually, the code looks like it should be adding these names, so I need to
go back through my code and get back to you on that issue.
On Jul 7, 2015 9:58 AM, Ryan C. Thompson r...@thompsonclan.org wrote:
I've also encoundered another problem, this time I believe related to a
change the the
Hi, Arne.
This question is best posted on the support site:
https://support.bioconductor.org/
To give a preview of the answer, though, while coverage and binned counts
are related concepts, they are not really identical. The csaw package is
looking for read counts.
Sean
On Tue, Jul 7, 2015
Hello,
would it be possible+reasonable to enter csaw peak calling with RleList
object such as those generated by the GenomicAlignments' coverage method?
I'm not 100% sure but. I guess it'd be more performant to store and load
the RleList objects compared to bam files.
regards,
Arne
Hi, as Dan suggested after the update I get the same error as in Zin2...
so I tried to isolate the error and it seems to be correlated wit the
CAMERA package. Searching in the repos
(http://bioconductor.org/checkResults/release/bioc-LATEST/CAMERA/zin2-checksrc.html)
I found that the 'CAMERA
Has there been a solution to the short URL question?
On Tue, Mar 24, 2015 at 7:14 AM, Martin Morgan mtmor...@fredhutch.org
wrote:
On 03/24/2015 02:31 AM, Wolfgang Huber wrote:
Before we start a religious war, can we make progress on the pragmatic
goal of making it possible to provide such
OK, thanks. Should we add a little bit to each package landing page
indicating how to link?
On Tue, Jul 7, 2015 at 3:52 PM, Dan Tenenbaum dtene...@fredhutch.org
wrote:
- Original Message -
From: Vincent Carey st...@channing.harvard.edu
To: Martin Morgan mtmor...@fredhutch.org
- Original Message -
From: Vincent Carey st...@channing.harvard.edu
To: Martin Morgan mtmor...@fredhutch.org
Cc: Tim Triche, Jr. ttri...@usc.edu, bioc-devel@r-project.org, Gabe
Becker becker.g...@gene.com
Sent: Tuesday, July 7, 2015 12:49:24 PM
Subject: Re: [Bioc-devel] Short URLs
Ryan,
Thanks for pointing these out. I'll look into them soon, but I imagine your
assessment is correct.
Best,
Matt
On Mon, Jul 6, 2015 at 5:42 PM, Ryan C. Thompson r...@thompsonclan.org
wrote:
I also discovered another apparent bug later in the same function. The
second to last line of
