Dear Bioc Team,
I have implemented mapIds methods mapping featureNames (ExpressionSet) and
rownames (SummarizedExperiment) between major gene ID types such as
ENSEMBL and ENTREZ by passing that on AnnotationDbi::mapIds.
Given an ExpressionSet/SummarizedExperiment and an organism under
Thanks!
Valerie
On 12/17/2015 08:32 AM, Brad Friedman wrote:
> Thanks, I've made the corresponding change to release version, and
> bumped minor version there.
>
> I previously only made it to devel.
>
> Brad
>
> On Thu, Dec 17, 2015 at 8:21 AM, Obenchain, Valerie
>
Hi Brad,
Following up on this because AnalysisPageServer is still broken in
release. Can you please fix?
Thanks.
Valerie
On 12/14/2015 01:36 PM, Morgan, Martin wrote:
> At least for the R package side of things, I think the question of how to
> invoke R CMD in a Makefile is moot for
Thank YOU!!! Bioconductor is fantastic.
Brad Friedman
617-230-7055
> On Dec 17, 2015, at 8:47 AM, "Obenchain, Valerie"
> wrote:
>
> Thanks!
>
> Valerie
>
>> On 12/17/2015 08:32 AM, Brad Friedman wrote:
>> Thanks, I've made the corresponding change to
I've also found https://github.com/dpryan79/ChromosomeMappings useful
On Thu, Dec 17, 2015 at 6:40 PM, Hervé Pagès wrote:
> Hi Michael,
>
> On 12/17/2015 02:45 PM, Michael Lawrence wrote:
>>
>> Seems like seqlevelsStyle<- between e.g. UCSC and NCBI does not work
>> outside
Hi Michael,
On 12/17/2015 02:45 PM, Michael Lawrence wrote:
Seems like seqlevelsStyle<- between e.g. UCSC and NCBI does not work
outside of the "standard" chromosomes. Since GRCh38 (NCBI) and hg38
(UCSC) are the same assembly, we could probably implement a complete
mapping, right?