Re: [Bioc-devel] ncdf4 not installed on build machines

2016-01-13 Thread Dan Tenenbaum
Hi Stephanie, ncdf4 did not install on zin2 because I needed to update netcdf. Thanks for reminding me this was necessary. On windows I believe the build system was installing ncdf4 from source and failing because it doesn't know where netcdf.h is located on moscato2. However a binary

Re: [Bioc-devel] IRanges - PartitioningByEnd not found when package method runs.

2016-01-13 Thread Hervé Pagès
Hi Ben, Martin, On 01/13/2016 08:19 AM, Morgan, Martin wrote: Hi Ben -- nice to see you over here ;) You're using the release version of R (R-3.2.3) and presumably release versions of packages (my advice on placing sessionInfo() was a little too clever; you want your package loaded, so the

[Bioc-devel] IRanges - PartitioningByEnd not found when package method runs.

2016-01-13 Thread Ben Ward (TGAC)
Hi All, I am having an issue with an un-exported method in a package I am developing, the package imports Biostrings and IRanges. I have created a minimal, reproducible example, (many many thanks to Martin Morgan for telling me how to do this) in this repo branch: