Re: [Bioc-devel] how to declare vignette processing properly

Yeah, this was because pandoc-citeproc was not installed. So it should go away Dan - Original Message - > From: "lcollado" > To: "Dan Tenenbaum" > Cc: "Vincent Carey" , "bioc-devel" >

Re: [Bioc-devel] how to declare vignette processing properly

Hi, I had the same error at derfinder's devel build report yesterday morning (v1.7.0), and it went away on the build from yesterday afternoon (v1.7.1). Warning in (if (grepl("\\.[Rr]md$", file)) knit2html else if (grepl("\\.[Rr]rst$", : It seems you should call rmarkdown::render() instead of

Re: [Bioc-devel] how to declare vignette processing properly

on a system with pandoc-citeproc, this error is avoided. good call dan! On Fri, May 6, 2016 at 1:15 PM, Dan Tenenbaum wrote: > Is pandoc-citeproc installed? > > > - Original Message - > > From: "Vincent Carey" > > To: "Andrzej Oleś"

[Bioc-devel] how to declare vignette processing properly

this is for the current svn version of yriMulti, from 00check.log * checking re-building of vignette outputs ... WARNING Error in re-building vignettes: ... Warning in (if (grepl("\\.[Rr]md$", file)) knit2html else if (grepl("\\.[Rr]rst$", : It seems you should call rmarkdown::render()

Re: [Bioc-devel] vignette metadata dissapeared in Sweave/PDF vignettes

Hi Robert, thank you for reporting this! I've fixed it in https://github.com/aoles/biocViews/commit/a5f3cd0 (Dan Tenenbaum CC-ed). Cheers, Andrzej On Fri, May 6, 2016 at 9:46 AM, Robert Castelo wrote: > hi, > > I have noticed that in the recent release of BioC the

[Bioc-devel] vignette metadata dissapeared in Sweave/PDF vignettes

hi, I have noticed that in the recent release of BioC the vignettes produced as Sweave/PDF documents do not show anymore the metadata written using %\VignetteIndexEntry{}, while this seems to work fine with the HTML vignettes. compare for instance the vignette metadata in the landing pages