Re: [Bioc-devel] Need for file-based handling of meta-data

2016-06-29 Thread Thomas Girke
Great thanks. I will add some ideas later this week or next week. Thomas On Wed, Jun 29, 2016 at 12:44 PM Martin Morgan < martin.mor...@roswellpark.org> wrote: > On 06/29/2016 03:42 PM, Thomas Girke wrote: > > Yes, a "readSummarizedExperiment" would be a "modern-day analog of > >

Re: [Bioc-devel] Need for file-based handling of meta-data

2016-06-29 Thread Martin Morgan
On 06/29/2016 03:42 PM, Thomas Girke wrote: Yes, a "readSummarizedExperiment" would be a "modern-day analog of Biobase::readExpressionSet". I also agree with the other suggestions including github to get this started, and Vince's thoughts on binding meta-data more tightly to source data as well

Re: [Bioc-devel] NotNeeded in build report RSS feeds

2016-06-29 Thread Leonardo Collado Torres
Thanks Dan! On Wed, Jun 29, 2016 at 3:54 PM, Dan Tenenbaum wrote: > Indeed, you are right, Leo. I was able to identify the thing that had changed > and to restore it to its previous behavior. It should now behave as before, > only updating the rss feed when the build

Re: [Bioc-devel] Need for file-based handling of meta-data

2016-06-29 Thread Thomas Girke
Yes, a "readSummarizedExperiment" would be a "modern-day analog of Biobase::readExpressionSet". I also agree with the other suggestions including github to get this started, and Vince's thoughts on binding meta-data more tightly to source data as well as improving interoperability. As suggested I

Re: [Bioc-devel] NotNeeded in build report RSS feeds

2016-06-29 Thread Dan Tenenbaum
We didn't (intentionally anyway) change anything with the RSS feeds. We'll look into it. Dan - Original Message - > From: "lcollado" > To: "Antti Honkela" > Cc: "Dan Tenenbaum" , "bioc-devel" >

Re: [Bioc-devel] NotNeeded in build report RSS feeds

2016-06-29 Thread Dan Tenenbaum
We didn't (intentionally anyway) change anything with the RSS feeds. We'll look into it. Dan - Original Message - > From: "lcollado" > To: "Antti Honkela" > Cc: "Dan Tenenbaum" , "bioc-devel" >

Re: [Bioc-devel] NotNeeded in build report RSS feeds

2016-06-29 Thread Antti Honkela
Hi Dan, I follow the RSS feed on Feedly and for some time now it has shown two updates every day: "NotNeeded in Release" and "NotNeeded in Devel". Up to approximately 2 months ago I only saw updates when the status changed, but since then there have been these two daily non-updates which add