Re: [Bioc-devel] shrunken vignette

2016-07-15 Thread Dan Tenenbaum
Also note that the build system does not use devtools to build vignettes, it uses R CMD build. - Original Message - > From: "Kasper Daniel Hansen" > To: "Anand MT" > Cc: "bioc-devel" > Sent: Friday, July

Re: [Bioc-devel] BioC check error for flowClust on windows

2016-07-15 Thread Dan Tenenbaum
When you don't see a specific error message, it's often a hint that R actually crashed (popped up a dialog box that you can't see in the build report. And indeed that is the case here. I can reproduce it easily as follows: R --arch i386 library(flowClust) example(flowClust) It works

[Bioc-devel] BioC check error for flowClust on windows

2016-07-15 Thread Mike
Hi, Here is the CHECK report for flowClust on moscato1. There is not pacific error message on that page and I can't reproduce it on my local windows. Mike ___ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel

[Bioc-devel] Looking for small RNA-seq fastq files - to use in Rmarkdown

2016-07-15 Thread Krithika Bhuvaneshwar
Dear Bioconductor community, I'm exploring options to create a Bioconductor or package related to RNA-seq data. Specifically, I am looking for an example RNA-seq dataset (fastq files, human genome, preferably liver cancer) to use in Rmarkdown files. As you know the input files to be used in