Re: [Bioc-devel] unable to install/download IRanges, Biobase, GenomeInfoDb

2016-10-06 Thread Rodriguez Martinez, Andrea
Hi Dan, Thanks for your reply. I use the command: > biocLite("IRanges", ask=FALSE) And got: URL 'https://bioconductor.org/packages/3.4/bioc/src/contrib/IRanges_2.7.17.tar.gz': status was 'Failed writing received data to disk/application' However, after restarting R various times, it

Re: [Bioc-devel] unable to install/download IRanges, Biobase, GenomeInfoDb

2016-10-06 Thread Dan Tenenbaum
Have you tried to install those packages? Note that errors (or warnings) in the build report does NOT mean that you cannot install the packages. Installing them works for me in the devel version of bioconductor. If you have tried to install the packages, please share the command you used to do

[Bioc-devel] unable to install/download IRanges, Biobase, GenomeInfoDb

2016-10-06 Thread Rodriguez Martinez, Andrea
Hi, I am a bit worried to see that I'm unable to install 3 central packages of Bioconductor: IRanges, Biobase, GenomeInfoDb. IRanges has warnings in the build/check report, but the other two seem fine. Some dependencies of my package (MetaboSignal) depend on these 3 packages, which means

Re: [Bioc-devel] Harman not building on Windows due to mzR

2016-10-06 Thread Hervé Pagès
On 10/06/2016 03:10 PM, Laurent Gatto wrote: On 6 October 2016 23:01, Hervé Pagès wrote: On 10/06/2016 12:15 AM, Steffen Neumann wrote: Hi, On Mi, 2016-10-05 at 11:32 -0700, Hervé Pagès wrote: ... As a guess, if there are no compiler errors but 'mzR.dll' cannot be found, I suppose the

Re: [Bioc-devel] Harman not building on Windows due to mzR

2016-10-06 Thread Laurent Gatto
On 6 October 2016 23:01, Hervé Pagès wrote: > On 10/06/2016 12:15 AM, Steffen Neumann wrote: >> Hi, >> >> On Mi, 2016-10-05 at 11:32 -0700, Hervé Pagès wrote: >>> ... As a guess, if there are no compiler errors but 'mzR.dll' cannot be found, I suppose the final linking of the

Re: [Bioc-devel] Harman not building on Windows due to mzR

2016-10-06 Thread Hervé Pagès
On 10/06/2016 12:15 AM, Steffen Neumann wrote: Hi, On Mi, 2016-10-05 at 11:32 -0700, Hervé Pagès wrote: ... As a guess, if there are no compiler errors but 'mzR.dll' cannot be found, I suppose the final linking of the compiled objects failed? The error message is confusing: mzR.dll is

Re: [Bioc-devel] Harman not building on Windows due to mzR

2016-10-06 Thread Steffen Neumann
Hi, On Mi, 2016-10-05 at 11:32 -0700, Hervé Pagès wrote: > > > ... > > As a guess, if there are no compiler errors but 'mzR.dll' cannot be > > found, I suppose the final linking of the compiled objects failed? > The error message is confusing: mzR.dll is actually here but it > cannot be loaded.

Re: [Bioc-devel] Harman not building on Windows due to mzR

2016-10-06 Thread Steffen Neumann
Hi, On Mi, 2016-10-05 at 10:53 -0700, Hervé Pagès wrote: > Any reason you're linking mzR.dll against your own precompiled > libnetcdf.a? (located in mzR/src/win/). This masks the libnetcdf.a > that I installed on tokay1 per your request a couple of weeks ago > (by just extracting Ripley's