Re: [Bioc-devel] Question about InteractionSet package

2016-10-21 Thread Dan Tenenbaum
Oops, sorry, my bad. I read the warning and thought it was trying to install the package from CRAN, but I was just reading it wrong, that warning is irrelevant to your situation. Sounds like your situation is resolved based on your off-list email to me. Dan - Original Message - >

Re: [Bioc-devel] Question about InteractionSet package

2016-10-21 Thread Dan Tenenbaum
You need to tell us the command that produced that error. InteractionSet is a Bioconductor package, not a CRAN package. Maybe you tried to install it with install.packages() instead of biocLite()? See the "Installlation" section of

[Bioc-devel] Question about InteractionSet package

2016-10-21 Thread Ioannis Vardaxis
Hi, I am currently developing a package which I want to submit to Bioconductor. I am using the R-devel version. I am trying to install the InteractionSet package with no success. I get the following warnings: Warning: unable to access index for repository

Re: [Bioc-devel] Submitted package not available in Bioconductor 3.4

2016-10-21 Thread Andreas Kapouranis
Dear Martin, Thanks for this! I was not aware that I should leave the issue open. Regards, Andreas -- Chantriolnt - Andreas Kapourani PhD Candidate in Data Science, School of Informatics, University of Edinburgh

Re: [Bioc-devel] Submitted package not available in Bioconductor 3.4

2016-10-21 Thread Martin Morgan
On 10/21/2016 05:30 AM, Andreas Kapouranis wrote: Hi, Recently I submitted a package named "BPRMeth" for Bioconductor and it was marked as accepted more than one month ago. Here is the link for my submission: https://github.com/Bioconductor/Contributions/issues/74 However, with the new