[Bioc-devel] Help needed to reproduce my crash report

2016-11-15 Thread Ted Wong
Hi, I need help to reproduce a crash in my crash report. The crash report is: http://master.bioconductor.org/checkResults/3.4/bioc-LATEST/Anaquin/malbec1-buildsrc.html This is what I did: 1. svn co --username ... --password

[Bioc-devel] single package builder

2016-11-15 Thread Shepherd, Lori
Hello We will be attempting to update the single package builder to bioc 3.5 with R 3.4 over the next few days. Please note that there may be some disruption and the builders may not be available for packages that make updates during this time. We hope this transition will go quickly and

Re: [Bioc-devel] stuck in setting up Bioconductor GitHub

2016-11-15 Thread Dan Tenenbaum
Did you fork the repository first? - Original Message - > From: "Leif Väremo" > To: "bioc-devel" > Sent: Tuesday, November 15, 2016 1:50:37 AM > Subject: [Bioc-devel] stuck in setting up Bioconductor GitHub > Hi, > > I am trying to

Re: [Bioc-devel] OrganismDb package for Drosophila.melanogaster

2016-11-15 Thread Obenchain, Valerie
Hi Pariksheet, On 11/15/2016 03:32 AM, Pariksheet Nanda wrote: > Hi folks, > > It would be great to have an OrganismDb package for > Drosophila.melanogaster, similar to Homo.sapiens, Mus.musculus and > Rattus.norvegicus. > > While trying to do this on my own using the Homo.sapiens package as a >

Re: [Bioc-devel] Files removed from svn are not disappearing from Git mirror

2016-11-15 Thread James Collins
Martin, Hervé: Thanks both of you for the assistance! Hervé: Wasn't trying to make things any worse by committing and then removing them -- just thought that might work after I observed that the Git mirror appeared to register the new commits of files but not subsequent commits to delete them.

[Bioc-devel] stuck in setting up Bioconductor GitHub

2016-11-15 Thread Leif Väremo
Hi, I am trying to setup up my pre-existing Bioconductor package piano in GitHub. I am following the steps listed on the Bioconductor website: 1. git clone https://github.com/USER/REPO to clone the repository to your machine. 2. cd REPO to switch to the REPO directory. 3. bash

[Bioc-devel] OrganismDb package for Drosophila.melanogaster

2016-11-15 Thread Pariksheet Nanda
Hi folks, It would be great to have an OrganismDb package for Drosophila.melanogaster, similar to Homo.sapiens, Mus.musculus and Rattus.norvegicus. While trying to do this on my own using the Homo.sapiens package as a starting point, I found the most similar looking keys to relate org.Dm.eg.db